Browse Element(s) Details


OsAffx.26801.1.S1_x_at

Description tigr:9633.m00857
TID=OsAffx.26801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AUXIAA family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0948010/11AUX/IAA family protein, expressed
LOC_Os01g094501/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein
LOC_Os05g09480Os.57374.1.S1_at11/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.26801.1.S1_x_at10/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.18465.1.S1_at1/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09490Os.12182.1.S1_at11/115+5313098..5316239Proteasome subunit beta type 7 precursor, putative, expressed
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26801.1.S1_x_at--1116--4612Chr05:5310242..5310266 (25 bp)
GCGAGTACACGCTCGTCTACGAGGA
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--117--1871Chr05:5310266..5310290 (25 bp)
ACGACGAGGGCGACCAGATGCTCGT
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--983--7271NONE
GTGCCATGGAACATGTTCATCGCCG
NONE
OsAffx.26801.1.S1_x_at--257--4651Chr05:5310421..5310445 (25 bp)
GCGTGCTCAGGAGCTCCGACCTGAA
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--986--8971Chr05:5310442..5310557 (25 bp)
TGAACGCCTCCACGATACGAGCAGG
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--137--5071Chr05:5310571..5310595 (25 bp)
GCAGCTGCCGAGTGATCTTGATCTT
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--755--6551Chr05:5310642..5310666 (25 bp)
GATTATGATAGCTCTCTGTTTTGTT
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--11--8791Chr05:5310663..5310687 (25 bp)
TGTTTTTAATCCTTTTCTCTTCGCG
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--41--10391Chr05:5310675..5310699 (25 bp)
TTTTCTCTTCGCGTTCTTGGAAGAT
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--586--2431Chr05:5310711..5310735 (25 bp)
AAAATGCGCAAGAAGCGTCTTTTTT
LOC_Os05g09480
OsAffx.26801.1.S1_x_at--119--7971Chr05:5310739..5310763 (25 bp)
GGATCATGATGTTGTCGACTACGAC
LOC_Os05g09480
Target Sequence 
GCGAGTACACGCTCGTCTACGAGGACGACGAGGGCGACCAGATGCTCGTCGGCGACGTGCCATGGAACATGTTCATCGCC
GCGGCGAGGAGGCTGCGCGTGCTCAGGAGCTCCGACCTGAACGCCTCCACGATACGAGCAGGGAGCAGGAAGAGGGCAGC
TGCCGAGTGATCTTGATCTTGTTTTTTTCATCGCCGGGAGCAGAGCAGGAAGCATATCTGCATAGTGATTATGATAGCTC
TCTGTTTTGTTTTTAATCCTTTTCTCTTCGCGTTCTTGGAAGATTTTTGTGTACAAAAATGCGCAAGAAGCGTCTTTTTT
TGGGGATCATGATGTTGTCGACTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26801.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis