Browse Element(s) Details


Os.12182.1.S1_at

Description gb:AB026564.1
DB_XREF= gi:8671503
GEN=OsPBB1
TID=Os.12182.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12182 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBB1 mRNA for beta 2 subunit of 20S proteasome, complete cds.
PROD=beta 2 subunit of 20S proteasome
FL= gb:AB026564.1 gb:AK103126.1 gb:AK058440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0949011/11Proteasome subunit beta type 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein
LOC_Os05g09480Os.57374.1.S1_at11/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.26801.1.S1_x_at10/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.18465.1.S1_at1/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09490Os.12182.1.S1_at11/115+5313098..5316239Proteasome subunit beta type 7 precursor, putative, expressed
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12182.1.S1_at--826--6071Chr05:5314906..5314930 (25 bp)
GAGTAGATGTTACTGGGCCACACCT
LOC_Os05g09490
Os.12182.1.S1_at--38--9031Chr05:5314930..5315038 (25 bp)
TGCACACTGTTTATCCACATGGCTC
LOC_Os05g09490
Os.12182.1.S1_at--2--1971Chr05:5315046..5315070 (25 bp)
ACTCTTCCTTTTGCCACAATGGGTT
LOC_Os05g09490
Os.12182.1.S1_at--656--2971Chr05:5315063..5315087 (25 bp)
AATGGGTTCTGGATCCCTTGCGGCA
LOC_Os05g09490
Os.12182.1.S1_at--247--4191Chr05:5315077..5315101 (25 bp)
CCCTTGCGGCAATGTCAGTGTTTGA
LOC_Os05g09490
Os.12182.1.S1_at--605--931Chr05:5315297..5315321 (25 bp)
AGGCAATTCGTGGTGGTATCTTCAA
LOC_Os05g09490
Os.12182.1.S1_at--1013--431Chr05:5315314..5315338 (25 bp)
ATCTTCAATGACTTGGGCAGTGGCA
LOC_Os05g09490
Os.12182.1.S1_at--472--7511Chr05:5315344..5315368 (25 bp)
GTGGATGTTTGCGTAATCACCAAGG
LOC_Os05g09490
Os.12182.1.S1_at--138--4331Chr05:5316149..5316173 (25 bp)
CCTTGGGCTTAATGCACATCTTTAA
LOC_Os05g09490
Os.12182.1.S1_at--92--5631Chr05:5316184..5316208 (25 bp)
GACACATTTATGGAGGACCGATCTT
LOC_Os05g09490
Os.12182.1.S1_at--1054--10191Chr05:5316210..5316234 (25 bp)
TATATTTGCTAAACGGTGGTGCTTC
LOC_Os05g09490
Target Sequence 
GAGTAGATGTTACTGGGCCACACCTGCACACTGTTTATCCACATGGCTCCACGGACACTCTTCCTTTTGCCACAATGGGT
TCTGGATCCCTTGCGGCAATGTCAGTGTTTGAATCGAAGTACAAAGAAGGCCTCACAAGGGAGGAGGGAATACAACTTGT
TGCTGAGGCAATTCGTGGTGGTATCTTCAATGACTTGGGCAGTGGCAGCAATGTGGATGTTTGCGTAATCACCAAGGGGA
AGACAGAGTACTTGAGAAACCACCAGTTACCAAATCCAAGGACTTACGTTAGTTCGAAGGGGTACAACTTCACCAAGGGG
CAGACTGTGGTGTTGTCCACAAAGATAACACAACTGAAGCCGAAGGTAGAGGTGACAGAGGGTGATGCAATGGAGGAGTG
ATTTTGTGTGCTTACATTCAGACAAGCAGTCACGTTGAGAACATATGCTTTCATTTCAGTGGAAATGCTTGAACAAAAAA
AGATGACTCTTGTTGTACTTCCTTGGGCTTAATGCACATCTTTAAGTTGATTTTCGACACATTTATGGAGGACCGATCTT
ATATATTTGCTAAACGGTGGTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis