Browse Element(s) Details


Os.57374.1.S1_at

Description gb:AK111403.1
DB_XREF= gi:32996612
TID=Os.57374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E05, full insert sequence.
FL= gb:AK111403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0948011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein
LOC_Os05g09480Os.57374.1.S1_at11/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.26801.1.S1_x_at10/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.18465.1.S1_at1/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09490Os.12182.1.S1_at11/115+5313098..5316239Proteasome subunit beta type 7 precursor, putative, expressed
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57374.1.S1_at--1084--5751Chr05:5310295..5310319 (25 bp)
GACGTGCCATGGAAGTGAGTCCGAC
LOC_Os05g09480
Os.57374.1.S1_at--502--851Chr05:5310303..5310327 (25 bp)
ATGGAAGTGAGTCCGACACACACAC
LOC_Os05g09480
Os.57374.1.S1_at--186--2172Chr05:5310328..5310352 (25 bp)
ACACCATGAATGAATCTCTCGTCTT
LOC_Os05g09480
Os.57374.1.S1_at--1058--7131Chr05:5310348..5310372 (25 bp)
GTCTTCTCCAAAGCTAATGGCGACG
LOC_Os05g09480
Os.57374.1.S1_at--346--1571Chr05:5310359..5310383 (25 bp)
AGCTAATGGCGACGAATTCTTGATT
LOC_Os05g09480
Os.57374.1.S1_at--724--111Chr05:5310374..5310398 (25 bp)
ATTCTTGATTGATTGCAGCATGTTC
LOC_Os05g09480
Os.57374.1.S1_at--386--2611Chr05:5310444..5310468 (25 bp)
AACGCCTCCACGGTCAGCGAAATTT
LOC_Os05g09480
Os.57374.1.S1_at--1108--4591Chr05:5310460..5310484 (25 bp)
GCGAAATTTCTGGTTTTCTGCTCCT
LOC_Os05g09480
Os.57374.1.S1_at--489--6811Chr05:5310472..5310496 (25 bp)
GTTTTCTGCTCCTTTTTCTTGAGAA
LOC_Os05g09480
Os.57374.1.S1_at--510--2231Chr05:5310495..5310519 (25 bp)
AAATTTGATCGATTCTGACCCGTGA
LOC_Os05g09480
Os.57374.1.S1_at--649--6431Chr05:5310531..5310555 (25 bp)
GATCTTGTTTTTGCAGATACGAGCA
LOC_Os05g09480
Target Sequence 
GACGTGCCATGGAAGTGAGTCCGACACACACACACACCATGAATGAATCTCTCGTCTTCTCCAAAGCTAATGGCGACGAA
TTCTTGATTGATTGCAGCATGTTCATCGCCGCGGCGAGGAGGCTGCGCGTGCTCAGGAGCTCCGACCTGAACGCCTCCAC
GGTCAGCGAAATTTCTGGTTTTCTGCTCCTTTTTCTTGAGAAATTTGATCGATTCTGACCCGTGATTTTTGTTCTTGATC
TTGTTTTTGCAGATACGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis