Browse Element(s) Details


OsAffx.26804.1.S1_at

Description tigr:9633.m00864
TID=OsAffx.26804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aspartyl protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0953011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09520OsAffx.26803.1.S1_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520OsAffx.26803.1.S1_x_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520Os.30881.3.S1_x_at1/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26804.1.S1_at--1119--8731Chr05:5367836..5367860 (25 bp)
TGTACCAGCTGGCAAAGTCCCAAAA
LOC_Os05g09530
OsAffx.26804.1.S1_at--1091--5511Chr05:5367867..5367891 (25 bp)
GAAAATGTTTGCTCACTGCCTTGAT
LOC_Os05g09530
OsAffx.26804.1.S1_at--1028--9531Chr05:5368065..5368089 (25 bp)
TCTAGGTACCGAACTACTTTGCTGG
LOC_Os05g09530
OsAffx.26804.1.S1_at--4--2391Chr05:5368105..5368129 (25 bp)
AAACTTCTCTAAGCCTTTCAGCTGG
LOC_Os05g09530
OsAffx.26804.1.S1_at--1096--6711Chr05:5368174..5368198 (25 bp)
GTTCTCTGATTTCTTACCTGCCAGA
LOC_Os05g09530
OsAffx.26804.1.S1_at--253--6891Chr05:5368203..5368226 (24 bp)
GTATACCAGTCGTTTCTAGATTCTA
LOC_Os05g09530
OsAffx.26804.1.S1_at--640--8011Chr05:5368349..5368373 (25 bp)
GGAGGCTATTCATGTTTCCACTATG
LOC_Os05g09530
OsAffx.26804.1.S1_at--146--6171Chr05:5368852..5368876 (25 bp)
GAGGTTGTATTTCACTTCAAGGAAC
LOC_Os05g09530
OsAffx.26804.1.S1_at--67--8171Chr05:5368872..5368896 (25 bp)
GGAACTGCTTACTTTGCGAGTCTAC
LOC_Os05g09530
OsAffx.26804.1.S1_at--677--9151Chr05:5368886..5368910 (25 bp)
TGCGAGTCTACCCTCATGAATATAT
LOC_Os05g09530
OsAffx.26804.1.S1_at--375--8071Chr05:5369014..5369038 (25 bp)
GGAGCACTATTACTGTCTTGGGTTT
LOC_Os05g09530
Target Sequence 
TGTACCAGCTGGCAAAGTCCCAAAAATGGAAGAAAATGTTTGCTCACTGCCTTGATGGCAAAAGGAGTGGGGGCATATTT
GTGTTAGGCCATATTGTGGGTCCAAAAGTTAGAAAAACTCCTCTGGATCAAACAAGTTCTAGGTACCGAACTACTTTGCT
GGAAATAACTGTAGGAGAAACTTCTCTAAGCCTTTCAGCTGGAAATGTTGAGATAAAAAGTCAAAACATGACAATATTGG
AAACTGGTTCTCTGATTTCTTACCTGCCAGAGAAAGTATACCAGTCGTTTCTAGATTCTATATTTTCTGATCTTGAGGAT
ATCAGTGTCATAAACATTGGAGGCTATTCATGTTTCCACTATGAACGAAGTATTGATGCTAGGTTTCCAGAGGTTGTATT
TCACTTCAAGGAACTGCTTACTTTGCGAGTCTACCCTCATGAATATATGTTTCACAATATGGAGGAGCACTATTACTGTC
TTGGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis