Browse Element(s) Details


Os.6629.1.S1_at

Description gb:CA765143
DB_XREF= gi:27546927
DB_XREF=AF53-Rpf_06_G07_T7_028.ab1
CLONE=C0002071
TID=Os.6629.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6629 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0958011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6629.1.S1_at--269--231Chr05:5394872..5394896 (25 bp)
ATATTTGCAGCTCTAGTTGACGATA
LOC_Os05g09580
Os.6629.1.S1_at--921--131Chr05:5394944..5394968 (25 bp)
ATTAATCCTAGTGCTACCAACTCTG
LOC_Os05g09580
Os.6629.1.S1_at--266--3011Chr05:5395069..5395093 (25 bp)
AATGACAAGTCGCTCTCGTGATTGC
LOC_Os05g09580
Os.6629.1.S1_at--384--8831Chr05:5395087..5395111 (25 bp)
TGATTGCGGCATCGCGGTCCATTCA
LOC_Os05g09580
Os.6629.1.S1_at--1112--7251Chr05:5395103..5395127 (25 bp)
GTCCATTCATTGTCCAAGGCCGATA
LOC_Os05g09580
Os.6629.1.S1_at--636--8831Chr05:5395138..5395162 (25 bp)
TGATTATCCGTCATCATCCAGAACC
LOC_Os05g09580
Os.6629.1.S1_at--718--411Chr05:5395196..5395220 (25 bp)
ATCATCTATGGTCTATTGCGGTATT
LOC_Os05g09580
Os.6629.1.S1_at--1039--4671Chr05:5395213..5395237 (25 bp)
GCGGTATTGCCTATTGGTCTCTCAA
LOC_Os05g09580
Os.6629.1.S1_at--414--10391Chr05:5395259..5395283 (25 bp)
TTTTCTGGGCAGACTGATTGCACTG
LOC_Os05g09580
Os.6629.1.S1_at--801--10731Chr05:5395276..5395300 (25 bp)
TTGCACTGCACTATTGCACTACTGG
LOC_Os05g09580
Os.6629.1.S1_at--406--5691Chr05:5395307..5395331 (25 bp)
GACTATCTTCAGTGGACAGTGGCCT
LOC_Os05g09580
Target Sequence 
ATATTTGCAGCTCTAGTTGACGATATTTACTGAAGATTGCAGGTTATAAATTTACCAGATACTCTAGGATCAATTAATCC
TAGTGCTACCAACTCTGAATTATCTGAACAGAAGATGGAAGTTTCATGAATCGGTGATCTGATCTAATCAGTATCTGCAG
TGTGATACTGTGAATCTGTGATACACAAACTGACAGTAATGACAAGTCGCTCTCGTGATTGCGGCATCGCGGTCCATTCA
TTGTCCAAGGCCGATAATAAAAAGAATGATTATCCGTCATCATCCAGAACCGATAAATAAAGGGAAATGATTATCCAAAA
AAAAATCATCTATGGTCTATTGCGGTATTGCCTATTGGTCTCTCAAGTCAACTATTCTTAACCTTTTTTTTCTGGGCAGA
CTGATTGCACTGCACTATTGCACTACTGGNTTTGCGACTATCTTCAGTGGACAGTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis