Browse Element(s) Details


OsAffx.14614.1.S1_at

Description tigr:9633.m00867
TID=OsAffx.14614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0956011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14614.1.S1_at--1078--1051Chr05:5380584..5380608 (25 bp)
AGGGTGCAGCCGTGCTCCCGTTCGC
LOC_Os05g09560
OsAffx.14614.1.S1_at--451--10631Chr05:5380604..5380628 (25 bp)
TTCGCGCGGAAGCTACTCCTCGCGG
LOC_Os05g09560
OsAffx.14614.1.S1_at--1068--4131Chr05:5380608..5380632 (25 bp)
CGCGGAAGCTACTCCTCGCGGCGGT
LOC_Os05g09560
OsAffx.14614.1.S1_at--516--1811Chr05:5380691..5380715 (25 bp)
ACCCTCATCGCGTCCGTTGTGTCAT
LOC_Os05g09560
OsAffx.14614.1.S1_at--663--531Chr05:5380697..5380721 (25 bp)
ATCGCGTCCGTTGTGTCATTCTCGG
LOC_Os05g09560
OsAffx.14614.1.S1_at--662--7251Chr05:5380702..5380726 (25 bp)
GTCCGTTGTGTCATTCTCGGCGACA
LOC_Os05g09560
OsAffx.14614.1.S1_at--989--4231Chr05:5380704..5380728 (25 bp)
CCGTTGTGTCATTCTCGGCGACATT
LOC_Os05g09560
OsAffx.14614.1.S1_at--510--4211Chr05:5380752..5380776 (25 bp)
CCGCCGTTGCGTACGCGGTCATGGC
LOC_Os05g09560
OsAffx.14614.1.S1_at--640--6691Chr05:5380853..5380877 (25 bp)
GTTCCACGCTCAAGTCGATGCTTTA
LOC_Os05g09560
OsAffx.14614.1.S1_at--1052--1811Chr05:5380858..5380882 (25 bp)
ACGCTCAAGTCGATGCTTTACCCGC
LOC_Os05g09560
OsAffx.14614.1.S1_at--298--1151Chr05:5380865..5380889 (25 bp)
AGTCGATGCTTTACCCGCCCGACAT
LOC_Os05g09560
Target Sequence 
AGGGTGCAGCCGTGCTCCCGTTCGCGCGGAAGCTACTCCTCGCGGCGGTGGCGTCGGGGCTCCCGCTCACGCATTTCGTC
AGGCAGCTGGCGCACCACCTTGCCGCCACCCTCATCGCGTCCGTTGTGTCATTCTCGGCGACATTCACGCTCCTCCTCGC
CACCCGCGCCGCCGTTGCGTACGCGGTCATGGCCGTCTACGCGGGCAAGCCGCTCCTCGCCGGCGCCAAGCCTGCCTCTC
CTCCTTCCTCGCCCTCCTCGTCACCGCGTGTTCCACGCTCAAGTCGATGCTTTACCCGCCCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis