Browse Element(s) Details


Os.148.1.S1_at

Description gb:D10860.1
DB_XREF= gi:287396
TID=Os.148.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for chilling tolerance related protein, complete cds, clone:pBC442
DEF=Oryza sativa (japonica cultivar-group) mRNA for chilling tolerance related protein, complete cds, clone:pBC442.
FL= gb:D10860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g095504/11Der1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.148.1.S1_at--306--8631NONE
TGGTGGCCATATCACTGCCTGGGCA
NONE
Os.148.1.S1_at--145--9191NONE
TGCCTGGGCATTGTCAGCTCATTAC
NONE
Os.148.1.S1_at--1097--1571NONE
AGCTCATTACCCTTCCTGGATATTT
NONE
Os.148.1.S1_at--806--8031NONE
GGAGTATACCCATGGTCAGCACTGC
NONE
Os.148.1.S1_at--129--1511NONE
AGCACTGCTTCTTTATGTCTGGAGC
NONE
Os.148.1.S1_at--1019--1271Chr05:5374609..5374633 (25 bp)
AGATCAGCATGTATGGCCTTGTCCA
LOC_Os05g09550
Os.148.1.S1_at--735--6111Chr05:5374463..5374484 (22 bp)
GAGGTCCTTTTATCTACCATGGGCA
LOC_Os05g09550
Os.148.1.S1_at--2--231Chr05:5374418..5374442 (25 bp)
ATTTGGCTCAGAGATACTCCCTGGC
LOC_Os05g09550
Os.148.1.S1_at--317--10611Chr05:5374392..5374416 (25 bp)
TTCTGGGAATTCTCGTTGGACACAC
LOC_Os05g09550
Os.148.1.S1_at--1107--3091NONE
AATAGGTGTGCAGGCGAACCGTCCG
NONE
Os.148.1.S1_at--1132--3151NONE
CAATTGAATTCGTGGTTTGCCCCGT
NONE
Target Sequence 
TGGTGGCCATATCACTGCCTGGGCATTGTCAGCTCATTACCCTTCCTGGATATTTATTTCCTTGGGAGTATACCCATGGT
CAGCACTGCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCC
TTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGT
TGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTAC
ATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACCGTCCGGTTCCGACCCGCGTCCGCCAACACCGGTAACAC
GCCTTCAGCCGGTCCACCACGGCGGTTCCCTTCCATGGTAACCGGCCGGCCCAACCAAATTCCCACCCTCCCAATTGAAT
TCGTGGTTTGCCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis