Browse Element(s) Details


OsAffx.4290.1.S1_at

Description tigr:9633.m00872
TID=OsAffx.4290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0961011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4290.1.S1_at--687--8551Chr05:5402762..5402786 (25 bp)
TGGATGGGAGCCAAGGTCCTACAAG
LOC_Os05g09610
OsAffx.4290.1.S1_at--178--791Chr05:5402759..5402783 (25 bp)
ATGGGAGCCAAGGTCCTACAAGGAC
LOC_Os05g09610
OsAffx.4290.1.S1_at--912--2211Chr05:5402742..5402766 (25 bp)
ACAAGGACGGGGACAGAGCTCTCGC
LOC_Os05g09610
OsAffx.4290.1.S1_at--345--1591Chr05:5402726..5402750 (25 bp)
AGCTCTCGCCGGAGATTATAGCCGC
LOC_Os05g09610
OsAffx.4290.1.S1_at--614--9491Chr05:5402723..5402747 (25 bp)
TCTCGCCGGAGATTATAGCCGCAGT
LOC_Os05g09610
OsAffx.4290.1.S1_at--540--6551Chr05:5402713..5402737 (25 bp)
GATTATAGCCGCAGTGGTGGACATC
LOC_Os05g09610
OsAffx.4290.1.S1_at--128--311Chr05:5402709..5402733 (25 bp)
ATAGCCGCAGTGGTGGACATCTTGA
LOC_Os05g09610
OsAffx.4290.1.S1_at--79--1671Chr05:5402707..5402731 (25 bp)
AGCCGCAGTGGTGGACATCTTGACG
LOC_Os05g09610
OsAffx.4290.1.S1_at--480--3451Chr05:5402702..5402726 (25 bp)
CAGTGGTGGACATCTTGACGCCCGA
LOC_Os05g09610
OsAffx.4290.1.S1_at--385--8631Chr05:5402699..5402723 (25 bp)
TGGTGGACATCTTGACGCCCGAGCG
LOC_Os05g09610
OsAffx.4290.1.S1_at--265--8531Chr05:5402696..5402720 (25 bp)
TGGACATCTTGACGCCCGAGCGTCG
LOC_Os05g09610
Target Sequence 
TGGATGGGAGCCAAGGTCCTACAAGGACGGGGACAGAGCTCTCGCCGGAGATTATAGCCGCAGTGGTGGACATCTTGACG
CCCGAGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis