Browse Element(s) Details


OsAffx.14616.1.S1_at

Description tigr:9633.m00876
TID=OsAffx.14616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004135 putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0964011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein
LOC_Os05g09700NANA5+5450156..5450362hypothetical protein
LOC_Os05g09704Os.10534.1.S1_at11/115+5452049..5454029HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14616.1.S1_at--800--7751Chr05:5426845..5426869 (25 bp)
GGTGATCACGCTCGCGAACAACCGC
LOC_Os05g09640
OsAffx.14616.1.S1_at--6--2711Chr05:5426939..5426963 (25 bp)
AAGCTCACCGGCTGCATTCCGGAGG
LOC_Os05g09640
OsAffx.14616.1.S1_at--1024--1751Chr05:5427105..5427129 (25 bp)
ACCTCGTCTGCGACCTCAAGCGGAT
LOC_Os05g09640
OsAffx.14616.1.S1_at--1133--9391Chr05:5427108..5427132 (25 bp)
TCGTCTGCGACCTCAAGCGGATCAC
LOC_Os05g09640
OsAffx.14616.1.S1_at--332--9491Chr05:5427111..5427135 (25 bp)
TCTGCGACCTCAAGCGGATCACCAA
LOC_Os05g09640
OsAffx.14616.1.S1_at--824--5831Chr05:5427116..5427140 (25 bp)
GACCTCAAGCGGATCACCAACCTGT
LOC_Os05g09640
OsAffx.14616.1.S1_at--337--2671Chr05:5427122..5427146 (25 bp)
AAGCGGATCACCAACCTGTCCGTCT
LOC_Os05g09640
OsAffx.14616.1.S1_at--987--9491Chr05:5427159..5427183 (25 bp)
TCTCCGGCATCAGCCAGCACTGCAA
LOC_Os05g09640
OsAffx.14616.1.S1_at--44--8411Chr05:5427194..5427218 (25 bp)
GGCCGCAGCGTGTTCGACTTCGTCG
LOC_Os05g09640
OsAffx.14616.1.S1_at--600--5071Chr05:5427198..5427222 (25 bp)
GCAGCGTGTTCGACTTCGTCGGCAA
LOC_Os05g09640
OsAffx.14616.1.S1_at--58--9451Chr05:5427372..5427396 (25 bp)
TCGGCGGCGCGATGCCATCGTTCGG
LOC_Os05g09640
Target Sequence 
GGTGATCACGCTCGCGAACAACCGCCTCACCGGCCCCGTCCCGTCGGCGTACGGCTACGGCGGCCGCGTCCGGGAGGTGC
TGTTCCTCAACAACAAGCTCACCGGCTGCATTCCGGAGGAGCTCGGGTTCTTGCCCACCATCGAGGTGCTCGACCTGAGC
TACAACTCGCTCTCCGGCCACCTCCCGCCCACGCTGTCCTGCCTCGCCGGCATCGAGGTGCTCAACATCGCGCACAACCA
GTTCACCGGCGAGCTCCCGGACCTCGTCTGCGACCTCAAGCGGATCACCAACCTGTCCGTCTCCTTCAACTTCTTCTCCG
GCATCAGCCAGCACTGCAACCGCCTCGCCGGCCGCAGCGTGTTCGACTTCGTCGGCAACTGCGTCCCCGGCCGCGGCCTG
CAGCGCCCGCCGCCGGAGTGCGACGGCGGCCCGGGCGACGGCGGCCTCAGCTGCCTGCGCAGCATCCCCGTCACCCGCCC
CGTCCCCTGCGCCCAGGCCTCCGTCTCCGTCGGCGTCGGCGTCATCGTCGGCGGCGCGATGCCATCGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis