Browse Element(s) Details


OsAffx.16862.1.S1_at

Description tigr:9636.m00615
TID=OsAffx.16862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0679010/11hypothetical protein
LOC_Os05g096602/11HAD superfamily phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein
LOC_Os08g06820Os.35344.3.S1_x_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.1.S1_s_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_s_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820Os.35344.18.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.3.S1_x_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.31552.2.S1_at1/118+3799602..3806716transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16862.1.S1_at--622--3811NONE
CTCCTGCGCGACAGGGAGATGACTA
NONE
OsAffx.16862.1.S1_at--623--6211Chr08:3784106..3784291 (25 bp)
GAGGCGGTGACGGTCTATTCACAGA
LOC_Os08g06790
OsAffx.16862.1.S1_at--806--5751Chr08:3784278..3784299 (22 bp)
GACGGTCTATTCACAGAGCAGCAAA
LOC_Os08g06790
OsAffx.16862.1.S1_at--807--3412Chr08:3784288..3784312 (25 bp)
CAGAGCAGCAAATTGGTATCGGAAT
LOC_Os08g06790
OsAffx.16862.1.S1_at--770--6891Chr08:3784303..3784327 (25 bp)
GTATCGGAATCCAATTGCAGAGGAT
LOC_Os08g06790
OsAffx.16862.1.S1_at--260--7212Chr08:3784352..3784376 (25 bp)
GTCGACACGGTTGCGGAGTTGTTTA
LOC_Os08g06790
OsAffx.16862.1.S1_at--834--6632Chr08:3784369..3784393 (25 bp)
GTTGTTTATCAACTCGGAGTCGCGA
LOC_Os08g06790
OsAffx.16862.1.S1_at--735--371Chr08:3784376..3784400 (25 bp)
ATCAACTCGGAGTCGCGATGGACGT
LOC_Os08g06790
OsAffx.16862.1.S1_at--382--353Chr08:3784444..3784468 (25 bp)
ATAACTGTGCATCAGGGCTTCTGCG
LOC_Os08g06790
OsAffx.16862.1.S1_at--258--3471Chr08:3784456..3784480 (25 bp)
CAGGGCTTCTGCGTTATGATTCGAA
LOC_Os08g06790
OsAffx.16862.1.S1_at--732--10433Chr08:3784469..3784493 (25 bp)
TTATGATTCGAAGGCAAGGCTGCGG
LOC_Os08g06790
Target Sequence 
CTCCTGCGCGACAGGGAGATGACTAGATGTGGTGCTCGGGTTGATGGCGGCGGAAGCGATTGGCGATCCAATCGGTGGGT
TGGACACTTCAGGCAGGTGCCGGCGGGATTCGGCGCGGGCCGGCTCCGGTCATTGGAGGCGGTGACGGTCTATTCACAGA
GCAGCAAATTGGTATCGGAATCCAATTGCAGAGGATGTGCAGTTTGTGTAGCTGGTGGAGGTCGACACGGTTGCGGAGTT
GTTTATCAACTCGGAGTCGCGATGGACGTGGAGATCAGCACGGAGGCTAGGTGGCTGGAATTGACAGCAAGAATAACTGT
GCATCAGGGCTTCTGCGTTATGATTCGAAGGCAAGGCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis