Browse Element(s) Details


Os.31718.1.S1_at

Description gb:AK106864.1
DB_XREF= gi:32992073
TID=Os.31718.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.21 (OJ9990_A01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C10, full insert sequence.
FL= gb:AK106864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0673010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31718.1.S1_at--520--8391NONE
GGCGCAACAGCGAAGCGGATCATCG
NONE
Os.31718.1.S1_at--1158--4252Chr08:3766045..3766069 (25 bp)
CCGGATGCATCGTGACGTAGGAGAT
LOC_Os08g06730
Os.31718.1.S1_at--411--8832Chr08:3766090..3766114 (25 bp)
TGATTCAGTGAATCCTTTCATGCTG
LOC_Os08g06730
Os.31718.1.S1_at--644--9612Chr08:3766107..3766131 (25 bp)
TCATGCTGAATTTCTGACAGGCTCA
LOC_Os08g06730
Os.31718.1.S1_at--538--5591Chr08:3766134..3766158 (25 bp)
GAAATCGAGCGAAGATCAGTGTGTT
LOC_Os08g06730
Os.31718.1.S1_at--330--413Chr08:3766148..3766172 (25 bp)
ATCAGTGTGTTGGTTTTAGAGGCAT
LOC_Os08g06730
Os.31718.1.S1_at--659--1172Chr08:3766175..3766199 (25 bp)
AGTAGAATTTTCAGTCGATGCCGGA
LOC_Os08g06730
Os.31718.1.S1_at--997--7192Chr08:3766188..3766212 (25 bp)
GTCGATGCCGGAAATGCAGTTTTAT
LOC_Os08g06730
Os.31718.1.S1_at--486--731Chr08:3766211..3766235 (25 bp)
ATGTTGCTCTCAGTTGTAGAATGAC
LOC_Os08g06730
Os.31718.1.S1_at--910--7031Chr08:3766261..3766285 (25 bp)
GTACAATGGGTGTTTTTACGCAGTT
LOC_Os08g06730
Os.31718.1.S1_at--350--10171Chr08:3766276..3766300 (25 bp)
TTACGCAGTTTACATACTTCGAAAA
LOC_Os08g06730
Target Sequence 
GGCGCAACAGCGAAGCGGATCATCGGTTGACATTCCCAGATCCGGATGCATCGTGACGTAGGAGATATAGGCATCGGAGG
AGGGATTGATTCAGTGAATCCTTTCATGCTGAATTTCTGACAGGCTCAGGGAAATCGAGCGAAGATCAGTGTGTTGGTTT
TAGAGGCATAGAGTAGAATTTTCAGTCGATGCCGGAAATGCAGTTTTATGTTGCTCTCAGTTGTAGAATGACAGGAAAAA
ACTGAAATTGTCAGGGTGTACAATGGGTGTTTTTACGCAGTTTACATACTTCGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis