Browse Element(s) Details


OsAffx.5725.1.S1_at

Description tigr:9636.m00604
TID=OsAffx.5725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0668011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5725.1.S1_at--247--2831Chr08:3744543..3744567 (25 bp)
AAGTTCTTTAATCTCAACCTGCCGA
LOC_Os08g06680
OsAffx.5725.1.S1_at--876--9731Chr08:3744535..3744559 (25 bp)
TAATCTCAACCTGCCGAAATTTATT
LOC_Os08g06680
OsAffx.5725.1.S1_at--90--4271Chr08:3744526..3744550 (25 bp)
CCTGCCGAAATTTATTTTCTTTGCA
LOC_Os08g06680
OsAffx.5725.1.S1_at--5--10331Chr08:3744511..3744535 (25 bp)
TTTCTTTGCAATTACCCATTTGAGT
LOC_Os08g06680
OsAffx.5725.1.S1_at--749--5051Chr08:3744477..3744501 (25 bp)
GCAGCAAATAATCATGTTTCAAGCA
LOC_Os08g06680
OsAffx.5725.1.S1_at--869--10491Chr08:3744430..3744484 (25 bp)
TTCAAGCAAACCTCAATTTGGTGGC
LOC_Os08g06680
OsAffx.5725.1.S1_at--486--1751Chr08:3744421..3744444 (24 bp)
ACCTCAATTTGGTGGCGGAGACCTG
LOC_Os08g06680
OsAffx.5725.1.S1_at--1026--10591Chr08:3744390..3744414 (25 bp)
TTCTGCGTGCTCTCAACACAGCTTA
LOC_Os08g06680
OsAffx.5725.1.S1_at--535--7311Chr08:3744384..3744408 (25 bp)
GTGCTCTCAACACAGCTTATTTCGA
LOC_Os08g06680
OsAffx.5725.1.S1_at--588--3671Chr08:3744369..3744393 (25 bp)
CTTATTTCGATTGCTTATCCGCCAA
LOC_Os08g06680
OsAffx.5725.1.S1_at--436--551Chr08:3744353..3744377 (25 bp)
ATCCGCCAAAAATGGTGGAGCTTGA
LOC_Os08g06680
Target Sequence 
AAGTTCTTTAATCTCAACCTGCCGAAATTTATTTTCTTTGCAATTACCCATTTGAGTAAATTTAAAGCAGCAAATAATCA
TGTTTCAAGCAAACCTCAATTTGGTGGCGGAGACCTGGTGGCCTTCTGCGTGCTCTCAACACAGCTTATTTCGATTGCTT
ATCCGCCAAAAATGGTGGAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis