Browse Element(s) Details


Os.31736.1.S1_at

Description gb:AK106838.1
DB_XREF= gi:32992047
TID=Os.31736.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.17 (OJ9990_A01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G10, full insert sequence.
FL= gb:AK106838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0670011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31736.1.S1_at--578--9252Chr08:3791957..3791977 (21 bp)
TCCTCAGGACCAACAGCGAAGCGAA
NONE
Os.31736.1.S1_at--157--591Chr08:3751318..3751342 (25 bp)
ATGCCACGATTGAGTGAATCCTTTT
LOC_Os08g06700
Os.31736.1.S1_at--750--8692Chr08:3843919..3843943 (25 bp)
TGTGCTGAAGTTCTGACAGGCTCAG
NONE
Os.31736.1.S1_at--466--5655Chr08:3843933..3843957 (25 bp)
GACAGGCTCAGGGAACTCGACAGAA
NONE
Os.31736.1.S1_at--476--7712Chr08:3843976..3844000 (25 bp)
GGGTGGAATTTTCAGTTCAGCCGAT
NONE
Os.31736.1.S1_at--715--6752Chr08:3843990..3844014 (25 bp)
GTTCAGCCGATGCTGCAATGCAGTT
NONE
Os.31736.1.S1_at--287--5032Chr08:3844009..3844033 (25 bp)
GCAGTTTTATGTTTGCTATCAGCTG
NONE
Os.31736.1.S1_at--1058--8752Chr08:3844066..3844090 (25 bp)
TGTTCAATGGGTGTTTTTCGACGGT
NONE
Os.31736.1.S1_at--227--10291Chr08:3751132..3751156 (25 bp)
TTTCGACGGTTTCACATACTTCGGA
LOC_Os08g06700
Os.31736.1.S1_at--58--10553Chr08:3844160..3844184 (25 bp)
TTCATGCCTAGTATGGATTGACGCC
NONE
Os.31736.1.S1_at--1133--5792Chr08:3844179..3844203 (25 bp)
GACGCCAAAAATGTGCTTATTCCTG
NONE
Target Sequence 
TCCTCAGGACCAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCATTGCCGTCAGCAGAGGCCACAGAT
GAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTG
TTGGTATAGGGTGGAATTTTCAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAA
ACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAACCGGTAAAACAGGGCCTTCT
AAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCCTAGTATGGATTGACGCCAAAAATGTGCTTATTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis