Browse Element(s) Details


OsAffx.16860.1.S1_at

Description tigr:9636.m00612
TID=OsAffx.16860.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0676011/11hypothetical protein
LOC_Os05g376901/11Coronatine-insensitive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0009625biological_processresponse to insect
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16860.1.S1_at--429--2931Chr08:3773244..3773268 (25 bp)
AAGGCAAATCGGCTACGTCTACATC
LOC_Os08g06760
OsAffx.16860.1.S1_at--63--9671Chr08:3773270..3773294 (25 bp)
TCAGCACCTCTTTGGCAGTTCTGTT
LOC_Os08g06760
OsAffx.16860.1.S1_at--422--9472Chr08:3773364..3773388 (25 bp)
TCTGGGTAATGTATGCCTTCCCTGT
LOC_Os08g06760
OsAffx.16860.1.S1_at--1090--3631Chr08:3773380..3773404 (25 bp)
CTTCCCTGTGGCATGTTCGGTGAGA
LOC_Os08g06760
OsAffx.16860.1.S1_at--470--7191Chr08:3773423..3773447 (25 bp)
GTCGGCATGTGGGTCATATTCTCTA
LOC_Os08g06760
OsAffx.16860.1.S1_at--774--111Chr08:3773440..3773464 (25 bp)
ATTCTCTACATGACATTCTCAGCGC
LOC_Os08g06760
OsAffx.16860.1.S1_at--1122--10571Chr08:3773455..3773479 (25 bp)
TTCTCAGCGCTGGTGATTTATGGCA
LOC_Os08g06760
OsAffx.16860.1.S1_at--423--10111Chr08:3773473..3773497 (25 bp)
TATGGCATATATCTACTGGCTGTAC
LOC_Os08g06760
OsAffx.16860.1.S1_at--329--9931Chr08:3773486..3773510 (25 bp)
TACTGGCTGTACATGCTGATCCGAC
LOC_Os08g06760
OsAffx.16860.1.S1_at--962--6111Chr08:3773567..3773591 (25 bp)
GAGTGTTCGGTCTTATTGGTGTTCT
LOC_Os08g06760
OsAffx.16860.1.S1_at--844--7751Chr08:3773584..3773608 (25 bp)
GGTGTTCTAGTTTCATTTGGACATC
LOC_Os08g06760
Target Sequence 
AAGGCAAATCGGCTACGTCTACATCCTCAGCACCTCTTTGGCAGTTCTGTTTCTTGCCCGACCTTTTCTGCCGGCTGGTT
ATGACGGCTGGATGCTCGCCGCATTTGCATCTGTTTGGGGTCTGGGTAATGTATGCCTTCCCTGTGGCATGTTCGGTGAG
AGGATTTGCAAGAGCTTGAGTCGGCATGTGGGTCATATTCTCTACATGACATTCTCAGCGCTGGTGATTTATGGCATATA
TCTACTGGCTGTACATGCTGATCCGACCCATTCAGCTTCAGTTCCAGCTCTAGCGCTGCCGTCATTGGGGTTGACATGGG
AAGGAGTGTTCGGTCTTATTGGTGTTCTAGTTTCATTTGGACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis