Browse Element(s) Details


Os.50220.1.S1_at

Description gb:AK120165.1
DB_XREF= gi:37989788
TID=Os.50220.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.50220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031I04, full insert sequence.
FL= gb:AK062058.1 gb:AK120165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0680011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein
LOC_Os08g06820Os.35344.3.S1_x_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.1.S1_s_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_s_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820Os.35344.18.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.3.S1_x_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.31552.2.S1_at1/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06830OsAffx.29068.1.S1_at11/118+3809681..3811100hypothetical protein
LOC_Os08g06840Os.29976.1.S1_at11/118+3812742..3813723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50220.1.S1_at--275--4431Chr08:3786260..3786284 (25 bp)
GCCATGCTGTTCCAATGCCTAATTT
LOC_Os08g06800
Os.50220.1.S1_at--1033--5431Chr08:3786201..3786225 (25 bp)
GAACCTGTAGCAATTCTGCAACGTC
LOC_Os08g06800
Os.50220.1.S1_at--293--3071Chr08:3786123..3786147 (25 bp)
AATCTATCGCCAGCTGATGCTACAT
LOC_Os08g06800
Os.50220.1.S1_at--89--4851Chr08:3786090..3786114 (25 bp)
GCTACATTCATCAGGGCTACATTCC
LOC_Os08g06800
Os.50220.1.S1_at--212--2772Chr08:3791470..3791494 (25 bp)
AAGAGCTCTGTATCTGAACTTTCTG
NONE
Os.50220.1.S1_at--294--1152Chr08:3791353..3791377 (25 bp)
AGTCGCGTGTCCGAGTCACTGTAGT
NONE
Os.50220.1.S1_at--991--9672Chr08:3791338..3791362 (25 bp)
TCACTGTAGTCGTCAGCGTTTGTCG
NONE
Os.50220.1.S1_at--51--4652Chr08:3791323..3791347 (25 bp)
GCGTTTGTCGTTTTGTTCTGTAACT
NONE
Os.50220.1.S1_at--712--7052Chr08:3791304..3791328 (25 bp)
GTAACTTTCTTTACAGCTGTGTGTG
NONE
Os.50220.1.S1_at--433--4732Chr08:3791289..3791313 (25 bp)
GCTGTGTGTGTGCTGAGTTATCCAA
NONE
Os.50220.1.S1_at--994--6472Chr08:3791254..3791278 (25 bp)
GATACTTAATCAGCCCGATGAGGAA
NONE
Target Sequence 
GCCATGCTGTTCCAATGCCTAATTTACCACTGGTAGGACCCGACGGGCAGATAAAGGCAGAACCTGTAGCAATTCTGCAA
CGTCGAATGATTCCAAGGAGAGGAGAACCAGTGGTACAATGGCTGGTGTTGTGGCGCAATCTATCGCCAGCTGATGCTAC
ATGGGAGGATGCTACATTCATCAGGGCTACATTCCCAAATTTTGAACCTTGAGGACAAGTTTCAACTTAAGAAGGGGGCA
ATGTCAGGACCTGAAGTCTGAAATGGAAGAGCTCTGTATCTGAACTTTCTGAATTTTCTGAAGAATTGAAGATAACGTTT
GGGAGAAAGGGGAAATATGAAGATCTGACGGCTGAGAAGGATACATGTTAAATCCAACGGTGGAGTCGCGTGTCCGAGTC
ACTGTAGTCGTCAGCGTTTGTCGTTTTGTTCTGTAACTTTCTTTACAGCTGTGTGTGTGCTGAGTTATCCAAGAGTGTAA
TCGATACTTAATCAGCCCGATGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis