Browse Element(s) Details


OsAffx.29068.1.S1_at

Description tigr:9636.m00619
TID=OsAffx.29068.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein
LOC_Os08g06820Os.35344.3.S1_x_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.1.S1_s_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_s_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820Os.35344.18.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.3.S1_x_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.31552.2.S1_at1/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06830OsAffx.29068.1.S1_at11/118+3809681..3811100hypothetical protein
LOC_Os08g06840Os.29976.1.S1_at11/118+3812742..3813723expressed protein
LOC_Os08g06850NANA8+3817417..3821222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06860OsAffx.24469.1.S1_x_at2/118+3822410..3823973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29068.1.S1_at--755--4731Chr08:3810539..3810563 (25 bp)
GCTGTCTCACAAGTCCGATTTGCAT
LOC_Os08g06830
OsAffx.29068.1.S1_at--402--6531Chr08:3810555..3810579 (25 bp)
GATTTGCATGTCCACTCGTACGCTG
LOC_Os08g06830
OsAffx.29068.1.S1_at--953--1991Chr08:3810568..3810592 (25 bp)
ACTCGTACGCTGTGGTTGGTGACAT
LOC_Os08g06830
OsAffx.29068.1.S1_at--847--1491Chr08:3810660..3810684 (25 bp)
AGCACAGTGGCCACTGGCTGGAAGC
LOC_Os08g06830
OsAffx.29068.1.S1_at--931--3331Chr08:3810671..3810695 (25 bp)
CACTGGCTGGAAGCTGCCATTTGTT
LOC_Os08g06830
OsAffx.29068.1.S1_at--875--10231Chr08:3810732..3810756 (25 bp)
TTTGGCCTCTCATGCAGCACTGGAG
LOC_Os08g06830
OsAffx.29068.1.S1_at--50--9471Chr08:3810785..3810809 (25 bp)
TCTGGATCTCGATGGCACCAAGCTG
LOC_Os08g06830
OsAffx.29068.1.S1_at--97--1571Chr08:3810867..3810891 (25 bp)
AGCTCATACCTCGTAAACCTAGGAG
LOC_Os08g06830
OsAffx.29068.1.S1_at--273--7031Chr08:3810879..3810903 (25 bp)
GTAAACCTAGGAGCCGCCAAGTTCT
LOC_Os08g06830
OsAffx.29068.1.S1_at--359--1671Chr08:3810890..3810914 (25 bp)
AGCCGCCAAGTTCTGCATTGCCAGG
LOC_Os08g06830
OsAffx.29068.1.S1_at--1060--3671Chr08:3810917..3810941 (25 bp)
CTTTCAGACCGATGAGGATCAGCGT
LOC_Os08g06830
Target Sequence 
GCTGTCTCACAAGTCCGATTTGCATGTCCACTCGTACGCTGTGGTTGGTGACATGGAGATCTGGATGTCATCCACGCACG
GCAGTGGCATCTACTGCTTTGACACAGTGAGCCATGTGTGGAGCACAGTGGCCACTGGCTGGAAGCTGCCATTTGTTGGT
CTCGCCGAGTATTGCCATGAGCACGGCCTTTGGTTTGGCCTCTCATGCAGCACTGGAGACAGGAGGAGGAGCTTGGTCCT
CTCCGCTCTGGATCTCGATGGCACCAAGCTGCCGGTGCTTCACAGCCTTCCTCTGGAGTTCACGCCACCCGACGCCCTCC
AGCTTGTCAGCTCATACCTCGTAAACCTAGGAGCCGCCAAGTTCTGCATTGCCAGGTTCTTTCAGACCGATGAGGATCAG
CGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis