Browse Element(s) Details


OsAffx.5727.1.S1_at

Description tigr:9635.m00582
TID=OsAffx.5727.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0643011/11hypothetical protein
LOC_Os08g068707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06355NANA7+3090114..3093055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5727.1.S1_at--637--3892Chr08:3832054..3832457 (25 bp)
CTGTGCAGATCATCGGTAGCAAGAA
LOC_Os08g06870
OsAffx.5727.1.S1_at--809--6432Chr08:3832047..3832355 (25 bp)
GATCATCGGTAGCAAGAACTGGCAT
LOC_Os08g06870
OsAffx.5727.1.S1_at--863--1732Chr08:3831959..3831983 (25 bp)
ACCTTTTTCATCCAGTTCCATCATC
LOC_Os08g06870
OsAffx.5727.1.S1_at--280--4032Chr08:3831711..3831735 (25 bp)
CGTTTCCTTGCTAATTTTCTGTTCT
LOC_Os08g06870
OsAffx.5727.1.S1_at--415--6852Chr08:3831710..3831734 (25 bp)
GTTTCCTTGCTAATTTTCTGTTCTT
LOC_Os08g06870
OsAffx.5727.1.S1_at--1117--9232Chr08:3831707..3831731 (25 bp)
TCCTTGCTAATTTTCTGTTCTTAGT
LOC_Os08g06870
OsAffx.5727.1.S1_at--477--9092Chr08:3831703..3831727 (25 bp)
TGCTAATTTTCTGTTCTTAGTATAT
LOC_Os08g06870
OsAffx.5727.1.S1_at--454--1271Chr07:3114791..3114815 (25 bp)
AGATGAAATTAGGAGCTACTAGCTT
LOC_Os07g06430
OsAffx.5727.1.S1_at--196--10451Chr07:3114783..3114807 (25 bp)
TTAGGAGCTACTAGCTTTCAAGCAT
LOC_Os07g06430
OsAffx.5727.1.S1_at--955--8071Chr07:3114780..3114804 (25 bp)
GGAGCTACTAGCTTTCAAGCATTGG
LOC_Os07g06430
OsAffx.5727.1.S1_at--660--10511Chr07:3114767..3114791 (25 bp)
TTCAAGCATTGGGAGCCCCTGCCTG
LOC_Os07g06430
Target Sequence 
CTGTGCAGATCATCGGTAGCAAGAACTGGCATGGCCTTGNCTAAAACCAACCACANGAGTACACCATTTGTGNATTCTCT
TAATGGGGCTAAGANACCTTTTTCATCCAGTTCCATCATCNAGGACNGNCATTNGTTTCGTCAATCTTGGNATCCANGGN
CTCCAGNGCCAAATANTGANGAAGAATTTACGANACAATGGAGGATNCGTTTCCTTGCTAATTTTCTGTTCTTAGTATAT
NCCAGTGGATTTATCGCACANAAGCGTAGGAATTNAACTCATAAGATGAAATTAGGAGCTACTAGCTTTCAAGCATTGGG
AGCCCCTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis