Browse Element(s) Details


OsAffx.29070.1.S1_s_at

Description tigr:9635.m00580
TID=OsAffx.29070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to hepatocarcinoma high expression protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0644011/11hydrolase, TatD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06355NANA7+3090114..3093055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004536molecular_functiondeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29070.1.S1_s_at--861--6152Chr07:3119675..3119699 (25 bp)
GAGGTTCTACAAGGTATTCCTGCAG
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--796--10572Chr07:3119679..3119703 (25 bp)
TTCTACAAGGTATTCCTGCAGAGAG
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--668--1412Chr07:3119715..3119739 (25 bp)
AGACAGACTCTCCATACTGTGATAT
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--835--5712Chr07:3119720..3119744 (25 bp)
GACTCTCCATACTGTGATATTAAAA
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--511--6512Chr07:3119735..3119759 (25 bp)
GATATTAAAAATACTCATGCTGGAA
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--383--9832Chr07:3119740..3119764 (25 bp)
TAAAAATACTCATGCTGGAATCAAG
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--499--1412Chr07:3119797..3119821 (25 bp)
AGAAAAGTACGAGCCGGATTCTACA
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--663--2832Chr07:3119801..3119825 (25 bp)
AAGTACGAGCCGGATTCTACAGTAA
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--77--6992Chr07:3119803..3119827 (25 bp)
GTACGAGCCGGATTCTACAGTAAAA
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--96--5852Chr07:3119807..3119831 (25 bp)
GAGCCGGATTCTACAGTAAAAGGTC
LOC_Os07g06440
OsAffx.29070.1.S1_s_at--738--6552Chr07:3119813..3119837 (25 bp)
GATTCTACAGTAAAAGGTCGCAATG
LOC_Os07g06440
Target Sequence 
GAGGTTCTACAAGGTATTCCTGCAGAGAGAATGATGATAGAGACAGACTCTCCATACTGTGATATTAAAAATACTCATGC
TGGAATCAAGCTCGTAAAGTCTGTCTGGCCATCCAAGAAGAAAGAAAAGTACGAGCCGGATTCTACAGTAAAAGGTCGCA
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29070.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis