Browse Element(s) Details


Os.10342.1.S1_s_at

Description gb:AK102271.1
DB_XREF= gi:32987480
TID=Os.10342.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089A08, full insert sequence.
FL= gb:AK102271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5718011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g063901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10342.1.S1_s_at--512--1111Chr02:35011253..35011355 (25 bp)
AGTGTCTGATAATGCTCTCACCTTT
LOC_Os02g57180
Os.10342.1.S1_s_at--87--9671Chr02:35011348..35011372 (25 bp)
TCACCTTTTCGGACCTCGGAATCGT
LOC_Os02g57180
Os.10342.1.S1_s_at--139--9451Chr02:35011363..35011387 (25 bp)
TCGGAATCGTGCCTCACAAATTGAA
LOC_Os02g57180
Os.10342.1.S1_s_at--973--2891Chr02:35011421..35011445 (25 bp)
GAAGGGCGGTCCAGCTTTTGGTTCT
LOC_Os02g57180
Os.10342.1.S1_s_at--734--1551Chr02:35011433..35011457 (25 bp)
AGCTTTTGGTTCTACTGTCAGTGAG
LOC_Os02g57180
Os.10342.1.S1_s_at--624--5891Chr02:35011473..35011497 (25 bp)
GAGCTGTAGTCTTCCACTCCTGAAG
LOC_Os02g57180
Os.10342.1.S1_s_at--798--9211Chr02:35011485..35011509 (25 bp)
TCCACTCCTGAAGACACTGTAGAAT
LOC_Os02g57180
Os.10342.1.S1_s_at--689--5931Chr02:35011587..35011611 (25 bp)
GAGCAGGACCATATTCGATGCATAT
LOC_Os02g57180
Os.10342.1.S1_s_at--612--6332Chr02:35011603..35011627 (25 bp)
GATGCATATGTTGGTTCCTGCTCAT
LOC_Os02g57180
Os.10342.1.S1_s_at--324--10671Chr02:35011617..35011641 (25 bp)
TTCCTGCTCATGTTTTTCACCAATA
LOC_Os02g57180
Os.10342.1.S1_s_at--131--6811Chr02:35011628..35011652 (25 bp)
GTTTTTCACCAATAAGACGCACAAA
LOC_Os02g57180
Target Sequence 
AGTGTCTGATAATGCTCTCACCTTTTCGGACCTCGGAATCGTGCCTCACAAATTGAAGGGTTACCCGGTTGAGTTTCTTG
TGTGCTACCGGAAGGGCGGTCCAGCTTTTGGTTCTACTGTCAGTGAGAAGATACGAAGTTCTGAGCTGTAGTCTTCCACT
CCTGAAGACACTGTAGAATTAATCTTTTAGTTGCAGAAACGTTGTTGTGTTTGTTTTCTTACTATCTGCTGCTGCTGCTG
CCAGCCGCCCAACAGCGAGCAGGACCATATTCGATGCATATGTTGGTTCCTGCTCATGTTTTTCACCAATAAGACGCACA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10342.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis