Browse Element(s) Details


Os.7287.1.S1_s_at

Description gb:AK072332.1
DB_XREF= gi:32982355
TID=Os.7287.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full insert sequence.
FL= gb:AK072332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5572010/11Cyclin, N-terminal domain containing protein
LOC_Os02g5578010/11Cyclin, N-terminal domain containing protein
LOC_Os02g5568010/11Cyclin, N-terminal domain containing protein
LOC_Os02g5718010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55680Os.7287.1.S1_s_at10/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55680Os.7287.1.S1_x_at5/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55689Os.26004.2.S1_at11/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.1.S1_x_at5/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.3.S1_x_at3/112+34097699..34101358hypothetical protein
LOC_Os02g55698Os.12270.1.S1_at5/112+34103062..34103445hypothetical protein
LOC_Os02g55710Os.28065.2.S1_at9/112+34108581..34109060hypothetical protein
LOC_Os02g55710Os.28065.1.S1_x_at4/112+34108581..34109060hypothetical protein
LOC_Os02g55720Os.7287.1.S1_s_at10/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55720Os.7287.1.S1_x_at5/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55729Os.26004.2.S1_at11/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.1.S1_x_at5/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.3.S1_x_at3/112+34122248..34125907hypothetical protein
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005739cellular_componentmitochondrion
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7287.1.S1_s_at--105--9014Chr02:35011013..35011037 (25 bp)
TGAATGGCCACGGTACATCGATGTT
LOC_Os02g57180
Os.7287.1.S1_s_at--377--9394Chr02:35011030..35011054 (25 bp)
TCGATGTTCCTCTTCCTATTGCAAG
LOC_Os02g57180
Os.7287.1.S1_s_at--651--4054Chr02:35011031..35011055 (25 bp)
CGATGTTCCTCTTCCTATTGCAAGG
LOC_Os02g57180
Os.7287.1.S1_s_at--188--6294Chr02:35011032..35011056 (25 bp)
GATGTTCCTCTTCCTATTGCAAGGG
LOC_Os02g57180
Os.7287.1.S1_s_at--482--5294Chr02:35011014..35011038 (25 bp)
GAATGGCCACGGTACATCGATGTTC
LOC_Os02g57180
Os.7287.1.S1_s_at--752--2954Chr02:35011015..35011039 (25 bp)
AATGGCCACGGTACATCGATGTTCC
LOC_Os02g57180
Os.7287.1.S1_s_at--809--874Chr02:35011016..35011040 (25 bp)
ATGGCCACGGTACATCGATGTTCCT
LOC_Os02g57180
Os.7287.1.S1_s_at--298--8454Chr02:35011017..35011041 (25 bp)
TGGCCACGGTACATCGATGTTCCTC
LOC_Os02g57180
Os.7287.1.S1_s_at--297--8454Chr02:35011018..35011042 (25 bp)
GGCCACGGTACATCGATGTTCCTCT
LOC_Os02g57180
Os.7287.1.S1_s_at--589--4394Chr02:35011019..35011043 (25 bp)
GCCACGGTACATCGATGTTCCTCTT
LOC_Os02g57180
Target Sequence 
TGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGGTATGAACTTAAATAATATCTTGTGTTGGTCAAGGCG
AATGGCCACGGTACATCGATGTTCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7287.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis