Browse Element(s) Details


Os.26004.2.S1_at

Description gb:AK065428.1
DB_XREF= gi:32975446
TID=Os.26004.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022F14, full insert sequence.
FL= gb:AK065428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5579011/11hypothetical protein
LOC_Os02g5568911/11hypothetical protein
LOC_Os02g5572911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26004.2.S1_at--219--4195Chr02:34153133..34153157 (25 bp)
CCCTGATTTATTCTCTTGACCATAT
LOC_Os02g55790
Os.26004.2.S1_at--991--9575Chr02:34153146..34153170 (25 bp)
TCTTGACCATATTCTGCACTGCTAT
LOC_Os02g55790
Os.26004.2.S1_at--697--234Chr02:34153189..34153213 (25 bp)
ATATATTTATATCCCTGTAGCATGT
LOC_Os02g55790
Os.26004.2.S1_at--534--2395Chr02:34153268..34153292 (25 bp)
AAACTCTTTTATTTTGACAATCACT
LOC_Os02g55790
Os.26004.2.S1_at--657--10396Chr02:34153279..34153303 (25 bp)
TTTTGACAATCACTCTAAGACGTAT
LOC_Os02g55790
Os.26004.2.S1_at--120--395Chr02:34153287..34153311 (25 bp)
ATCACTCTAAGACGTATGCAATTGC
LOC_Os02g55790
Os.26004.2.S1_at--951--6895Chr02:34153300..34153324 (25 bp)
GTATGCAATTGCGTCTTACGAAAGC
LOC_Os02g55790
Os.26004.2.S1_at--266--10475Chr02:34153315..34153339 (25 bp)
TTACGAAAGCAAGTGACCCTGAGAG
LOC_Os02g55790
Os.26004.2.S1_at--426--8936Chr02:34153328..34153352 (25 bp)
TGACCCTGAGAGCACTGATCTTTGT
LOC_Os02g55790
Os.26004.2.S1_at--186--2815Chr02:34153354..34153378 (25 bp)
AAGATGCACACAGCTTACTGCAGGA
LOC_Os02g55790
Os.26004.2.S1_at--285--2875Chr02:34153462..34153486 (25 bp)
AAGTGATGACTGTTGTTTCACAATG
LOC_Os02g55790
Target Sequence 
CCCTGATTTATTCTCTTGACCATATTCTGCACTGCTATNCTTGCTAAGTAATACAAATATATTTATATCCCTGTAGCATG
TNAGTTACTCTATAAGACAATTATTATTTTTACATAACTAATTAACATTTTTACTAAACTCTTTTATTTTGACAATCACT
CTAAGACGTATGCAATTGCGTCTTACGAAAGCAAGTGACCCTGAGAGCACTGATCTTTGTAAAGATGCACACAGCTTACT
GCAGGAGAGGATAACAAAATAGAAGTCTATAAAAATCTATAGAAGGGATCAANTATGCTTGACTGAATGATAGAGATGGA
AAAATGAANAAGTGATGACTGTTGTTTCACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26004.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis