Browse Element(s) Details


Os.17702.2.S1_x_at

Description gb:AK105898.1
DB_XREF= gi:32991107
TID=Os.17702.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F06, full insert sequence.
FL= gb:AK105898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1635011/11expressed protein
LOC_Os02g558401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16300OsAffx.17023.1.S1_at11/118+9947192..9948950hypothetical protein
LOC_Os08g16300Os.53644.1.S1_at1/118+9947192..9948950hypothetical protein
LOC_Os08g16310Os.9691.1.S1_at2/118+9949447..9950942hypothetical protein
LOC_Os08g16320OsAffx.5840.1.S1_x_at1/118+9952630..9954132Cytochrome P450 family protein
LOC_Os08g16330Os.4930.1.S1_at11/118+9958642..9959397expressed protein
LOC_Os08g16340OsAffx.23366.1.S1_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16340OsAffx.23366.2.S1_s_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16350Os.17702.2.S1_x_at11/118+9970633..9973632expressed protein
LOC_Os08g16350Os.17702.1.S1_at10/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.1.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.2.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16360NANA8+9978264..9978593expressed protein
LOC_Os08g16370NANA8+9979651..9984243transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17702.2.S1_x_at--626--471Chr08:9973002..9973026 (25 bp)
ATCTGCTGCTTCTTCCACAATAGAT
LOC_Os08g16350
Os.17702.2.S1_x_at--842--9331Chr08:9972958..9972982 (25 bp)
TCGCCGCGGATCAACACCTGGGAGG
LOC_Os08g16350
Os.17702.2.S1_x_at--704--7651Chr08:9972939..9972963 (25 bp)
GGGAGGTTCCATGGCCACAGATCGT
LOC_Os08g16350
Os.17702.2.S1_x_at--545--9292Chr02:34176891..34176915 (25 bp)
TCCCCGCGCCGGTGGATGAGGAACA
LOC_Os02g55840
Os.17702.2.S1_x_at--1041--10292Chr09:5617101..5617120 (20 bp)
TTTCCTCTCTTCTTGCTCTGGTTTT
NONE
Os.17702.2.S1_x_at--372--8571Chr08:9972623..9972647 (25 bp)
TGGTTTTTCTCCTCTCATGGCGGTT
LOC_Os08g16350
Os.17702.2.S1_x_at--295--9632Chr11:14737043..14737067 (25 bp)
TCATGGCGGTTGCTCTGTCTAGAGA
NONE
Os.17702.2.S1_x_at--762--9471Chr08:9972596..9972620 (25 bp)
TCTGTCTAGAGATTACTCCTCCTTT
LOC_Os08g16350
Os.17702.2.S1_x_at--333--9911Chr08:9972583..9972607 (25 bp)
TACTCCTCCTTTGAAATCCTTTTCA
LOC_Os08g16350
Os.17702.2.S1_x_at--1087--6552Chr11:14737104..14737128 (25 bp)
GATTAATTGGAGTTCGCTTTGCTGC
NONE
Os.17702.2.S1_x_at--338--9113Chr11:14737123..14737147 (25 bp)
TGCTGCGCGATTGCAATTGTTCTTG
NONE
Target Sequence 
ATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCA
CAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCT
GGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCAT
CTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGT
GATCCGGTCCCTGCTCCCCCGCCTGCTGTTGCTGCTGCTGCTTTCCTCTCTTCTTGCTCTGGTTTTTCTCCTCTCATGGC
GGTTGCTCTGTCTAGAGATTACTCCTCCTTTGAAATCCTTTTCAGTTTTGGTTGGATTAATTGGAGTTCGCTTTGCTGCG
CGATTGCAATTGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17702.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis