Browse Element(s) Details


OsAffx.5840.1.S1_x_at

Description tigr:9636.m01650
TID=OsAffx.5840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1643011/11cytochrome P450, putative
LOC_Os08g163201/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16400OsAffx.17024.1.S1_at11/118+10019898..10020314hypothetical protein
LOC_Os08g16410NANA8+10029769..10030080hypothetical protein
LOC_Os08g16420Os.26886.6.S1_s_at6/118+10030636..10033564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16420Os.26886.2.S1_s_at3/118+10030636..10033564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16430OsAffx.5840.1.S1_x_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16430OsAffx.5840.1.S1_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16440OsAffx.29313.1.S1_at1/118+10061926..10063600transposon protein, putative, Mutator sub-class
LOC_Os08g16450OsAffx.5841.1.S1_at11/118+10065520..10065849NBS-LRR disease resistance protein, putative
LOC_Os08g16460OsAffx.5842.1.S1_at11/118+10071081..10075054NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5840.1.S1_x_at--67--1791Chr08:10045791..10045815 (25 bp)
ACCGTCATGGAGGTGGGCTTGATCC
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--910--671Chr08:10045848..10045872 (25 bp)
ATGAGAAGGCTCAACATCGGCCCGG
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--496--2131Chr08:10045894..10045918 (25 bp)
ACAGGGTGCTCCATGGCTTCGTCGG
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--283--3931Chr08:10046224..10046247 (24 bp)
CGGCCGCGCTGTTCGAGACCCTGAG
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--30--471Chr08:10046350..10046374 (25 bp)
ATCTCGCTCTACTCCATGGGCAGGA
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--409--7231Chr08:10046478..10046502 (25 bp)
GTCGCACAAGTTCCTGGCGTTCAAC
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--857--6252Chr08:10046514..10046538 (25 bp)
GATGTGCCCCGGCAAGAGCATCGCC
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--55--4991Chr08:10046531..10046555 (25 bp)
GCATCGCCGTGATGCTGATGAAGAC
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--309--8871Chr08:10046546..10046570 (25 bp)
TGATGAAGACCATCGCCGCCGCGGT
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--837--5351Chr08:10046619..10046643 (25 bp)
GAAGATGTCGTGTCTTTTCCAGATG
LOC_Os08g16430
OsAffx.5840.1.S1_x_at--821--7191Chr08:10046625..10046649 (25 bp)
GTCGTGTCTTTTCCAGATGAAGAAT
LOC_Os08g16430
Target Sequence 
ACCGTCATGGAGGTGGGCTTGATCCGGCACGCCGTGCCGGCGTCCTGGTGGAAGTCGATGAGAAGGCTCAACATCGGCCC
GGAGAGGAGGCTCGCCGCGGCGCACAGGGTGCTCCATGGCTTCGTCGGCCGCGCTGTTCGAGACCCTGAGGCTGTACCCG
CCGGGGCATATGGAGCGGAAGACGGCGGTCGCCGACGACGTGATGCCGAGCGGCCACGAGGTGCGCGCCGGCGACGCGGC
GACGCCGTGCTCATCTCGCTCTACTCCATGGGCAGGATGGAGAGCCTATGGGGGAAGGATTGCCGGGAGTACAGGCCGGA
GAGGTGGCTCACCGGTGGCGACGGCGGCGGCAGCGGTGGCGCCCAGCTGCGGCACGTGCCGTCGCACAAGTTCCTGGCGT
TCAACTCCGGGGCGAGGATGTGCCCCGGCAAGAGCATCGCCGTGATGCTGATGAAGACCATCGCCGCCGCGGTGGTGTGG
AACTTCGACGTGGAGATGGTGGAAGGGCAGGCCGTGGAGCCGAAGATGTCGTGTCTTTTCCAGATGAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5840.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis