Browse Element(s) Details


OsAffx.17024.1.S1_at

Description tigr:9636.m01647
TID=OsAffx.17024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1640011/11hypothetical protein
LOC_Os04g135305/11Core histone H2A/H2B/H3/H4 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16380Os.26886.3.S1_x_at3/118+10005932..10008632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16390OsAffx.31811.3.S1_x_at8/118+10014275..10015781Zinc knuckle family protein
LOC_Os08g16400OsAffx.17024.1.S1_at11/118+10019898..10020314hypothetical protein
LOC_Os08g16410NANA8+10029769..10030080hypothetical protein
LOC_Os08g16420Os.26886.6.S1_s_at6/118+10030636..10033564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16420Os.26886.2.S1_s_at3/118+10030636..10033564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16430OsAffx.5840.1.S1_x_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16430OsAffx.5840.1.S1_at11/118+10045182..10046685cytochrome P450, putative

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17024.1.S1_at--117--9211Chr08:10020249..10020273 (25 bp)
TGCCAGAGATGAGGACATGCCAAGT
LOC_Os08g16400
OsAffx.17024.1.S1_at--206--592Chr04:7527927..7527951 (25 bp)
ATGCCAAGTCTCATCTTCCGGACAG
LOC_Os04g13530
OsAffx.17024.1.S1_at--759--10612Chr04:7527942..7527966 (25 bp)
TTCCGGACAGCCACGATAGTCTCAA
LOC_Os04g13530
OsAffx.17024.1.S1_at--422--3211Chr08:10020176..10020200 (25 bp)
CAAGGTGGAGCTCTTATGTTCCTCT
LOC_Os08g16400
OsAffx.17024.1.S1_at--405--732Chr04:7527999..7528023 (25 bp)
ATGTTCCTCTGCAACGGCATTTGCA
LOC_Os04g13530
OsAffx.17024.1.S1_at--268--2572Chr04:7528011..7528134 (25 bp)
AACGGCATTTGCACATGGCGCTTAC
LOC_Os04g13530
OsAffx.17024.1.S1_at--684--8392Chr04:7528126..7528150 (25 bp)
GGCGCTTACCAACCTCGATAATGGA
LOC_Os04g13530
OsAffx.17024.1.S1_at--57--7511Chr08:10020006..10020030 (25 bp)
GTGGTCGCAGCGATGTCTTGGCAAC
LOC_Os08g16400
OsAffx.17024.1.S1_at--65--9591Chr08:10019991..10020015 (25 bp)
TCTTGGCAACGAGACGCACGGAGAA
LOC_Os08g16400
OsAffx.17024.1.S1_at--121--411Chr08:10019958..10019982 (25 bp)
ATCAGTTAGAACTCCCGGCGACAGT
LOC_Os08g16400
OsAffx.17024.1.S1_at--1145--8231Chr08:10019930..10019954 (25 bp)
GGCACTGCAAATGGGACGTTAGGAT
LOC_Os08g16400
Target Sequence 
TGCCAGAGATGAGGACATGCCAAGTCTCATCTTCCGGACAGCCACGATAGTCTCAAAAATAGGACAGGGAGAACAAGGTG
GAGCTCTTATGTTCCTCTGCAACGGCATTTGCACATGGCGCTTACCAACCTCGATAATGGAGATGTGGTCGCAGCGATGT
CTTGGCAACGAGACGCACGGAGAAGATGGCACATCAGTTAGAACTCCCGGCGACAGTGGCGGCACTGCAAATGGGACGTT
AGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis