Browse Element(s) Details


OsAffx.5841.1.S1_at

Description tigr:9636.m01653
TID=OsAffx.5841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1645011/11NBS-LRR disease resistance protein, putative
LOC_Os09g153801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16430OsAffx.5840.1.S1_x_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16430OsAffx.5840.1.S1_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16440OsAffx.29313.1.S1_at1/118+10061926..10063600transposon protein, putative, Mutator sub-class
LOC_Os08g16450OsAffx.5841.1.S1_at11/118+10065520..10065849NBS-LRR disease resistance protein, putative
LOC_Os08g16460OsAffx.5842.1.S1_at11/118+10071081..10075054NB-ARC domain containing protein
LOC_Os08g16470Os.27458.1.A1_at3/118+10079140..10081794expressed protein
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5841.1.S1_at--1076--2671Chr08:10065563..10065587 (25 bp)
AAGCGGGCGCTAAGCTAGGCACTGC
LOC_Os08g16450
OsAffx.5841.1.S1_at--706--8391Chr08:10065568..10065592 (25 bp)
GGCGCTAAGCTAGGCACTGCCATTG
LOC_Os08g16450
OsAffx.5841.1.S1_at--421--10091Chr08:10065578..10065602 (25 bp)
TAGGCACTGCCATTGGAGAGCAAGT
LOC_Os08g16450
OsAffx.5841.1.S1_at--82--3832Chr09:9406085..9406122 (24 bp)
CTGCCATTGGAGAGCAAGTGATGAT
LOC_Os09g15380
OsAffx.5841.1.S1_at--485--711Chr08:10065604..10065628 (25 bp)
ATGATGATGTGTGGCTTCAAGGAAG
LOC_Os08g16450
OsAffx.5841.1.S1_at--138--4911Chr08:10065617..10065641 (25 bp)
GCTTCAAGGAAGACCTGGAGGACAT
LOC_Os08g16450
OsAffx.5841.1.S1_at--20--1771Chr08:10065629..10065653 (25 bp)
ACCTGGAGGACATGAAGGACATGCT
LOC_Os08g16450
OsAffx.5841.1.S1_at--315--3851Chr08:10065758..10065782 (25 bp)
CTGACATGCTCGACGGGTTCCAGGA
LOC_Os08g16450
OsAffx.5841.1.S1_at--608--3971Chr08:10065771..10065795 (25 bp)
CGGGTTCCAGGACAAATCGAAGTCT
LOC_Os08g16450
OsAffx.5841.1.S1_at--678--2272Chr08:10065784..10065808 (25 bp)
AAATCGAAGTCTGCAACTTTGCTAG
LOC_Os08g16450
OsAffx.5841.1.S1_at--1124--7151Chr08:10065792..10065816 (25 bp)
GTCTGCAACTTTGCTAGCTTTAGTT
LOC_Os08g16450
Target Sequence 
AAGCGGGCGCTAAGCTAGGCACTGCCATTGGAGAGCAAGTGATGATGATGTGTGGCTTCAAGGAAGACCTGGAGGACATG
AAGGACATGCTGGAATCCATGGCGGCGGTGCTCAAGGATGCAGAGAGGCGGTCGGTTACGGAGGAGTCGGTGCTGCTGTG
GCTGAAGCGGCTCAAGAATGCGGCCTACGACATCTCTGACATGCTCGACGGGTTCCAGGACAAATCGAAGTCTGCAACTT
TGCTAGCTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis