Browse Element(s) Details


Os.27458.1.A1_at

Description gb:CR281834
DB_XREF= gi:44668400
DB_XREF=CR281834
CLONE=p430f10p3
TID=Os.27458.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27458 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g164703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16440OsAffx.29313.1.S1_at1/118+10061926..10063600transposon protein, putative, Mutator sub-class
LOC_Os08g16450OsAffx.5841.1.S1_at11/118+10065520..10065849NBS-LRR disease resistance protein, putative
LOC_Os08g16460OsAffx.5842.1.S1_at11/118+10071081..10075054NB-ARC domain containing protein
LOC_Os08g16470Os.27458.1.A1_at3/118+10079140..10081794expressed protein
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16490OsAffx.29234.1.S1_x_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.29234.1.S1_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.5018.1.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.12942.2.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16500NANA8+10103422..10104715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27458.1.A1_at--1135--10132Chr08:18038557..18038581 (25 bp)
TATGCCTGTGCCTCAATTTGCAATG
NONE
Os.27458.1.A1_at--812--2351Chr08:10079214..10079238 (25 bp)
AAAGCTTTGTATGGCCACATGCGGG
LOC_Os08g16470
Os.27458.1.A1_at--89--7332Chr08:18038652..18038676 (25 bp)
GTGCTACTAATGTTTGCTTTTCTAT
NONE
Os.27458.1.A1_at--995--2632Chr08:18038699..18038723 (25 bp)
AACCATGAGAATGTTCCATACTATT
NONE
Os.27458.1.A1_at--1047--8792Chr08:18038728..18038752 (25 bp)
TGTTCCATGTTCCTTTTAACTGTGA
NONE
Os.27458.1.A1_at--1094--8132Chr08:18038764..18038788 (25 bp)
GGACAGGATCTCATTGACATGCCAT
NONE
Os.27458.1.A1_at--1109--9772Chr08:18039030..18039054 (25 bp)
TAAGGTTTGTTGTCTTGCTGATTCA
NONE
Os.27458.1.A1_at--1026--192Chr08:18039127..18039151 (25 bp)
ATTTGGACATGGTTGGGTCGGCCCA
NONE
Os.27458.1.A1_at--958--7172Chr08:18039143..18039167 (25 bp)
GTCGGCCCATGTGGACATGTGACTT
NONE
Os.27458.1.A1_at--430--10252Chr08:18039171..18039195 (25 bp)
TTTGGTCAGTGACTTATGGCTGGAT
NONE
Os.27458.1.A1_at--605--8611Chr08:18039331..18039355 (25 bp)
TGGGTTGACCCATATGTATTTGCAA
NONE
Target Sequence 
TATGCCTGTGCCTCAATTTGCAATGCAGGGGTTCAAAGCTTTGTATGGCCACATGCGGGGGTTCAAAGTTTTGTATGGTT
GTGGTTACAAATANTGTGCTACTAATGTTTGCTTTTCTATAGGACAAGTGTGAAAGAAACTTAACCATGAGAATGTTCCA
TACTATTCTANTGTTCCATGTTCCTTTTAACTGTGAAACACAGCAAAGGACAGGATCTCATTGACATGCCATGAGNTAAG
GTTTGTTGTCTTGCTGATTCANGAAGAGATGGCAGTATNGTTGGTGTGATTTCGANACGTGACATTGTGTTTGGTAAGTG
NACCTATGATNGTATTTGGACATGGTTGGGTCGGCCCATGTGGACATGTGACTTTGTTTTGGTCAGTGACTTATGGCTGG
ATATGNNNNNTNANNNNNNNNANNTNNTTNTTTNGNNNNNNNNNNNTNNNNNNNNANTNTNNTGATGTATTNNGTTNTGG
AAAGTTACCTTGTAATGTATTNNGTATCAAACTTGTGATTGTATTTGAATATGTGAATGGGTTGACCCATATGTATTTGC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27458.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis