Browse Element(s) Details


Os.47481.1.S1_at

Description gb:BX899305
DB_XREF= gi:40489116
DB_XREF=BX899305
CLONE=p577g05p5
TID=Os.47481.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0076H04.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g215503/11hypothetical protein
LOC_Os08g164801/11ATPase, AFG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed
LOC_Os10g21574NANA10+10720535..10720968hypothetical protein
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21600OsAffx.30482.1.S1_at10/1110+10727187..10728539hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47481.1.S1_at--686--4691Chr10:10702606..10702630 (25 bp)
GCGGCACTGACGACGCGCTCATCGA
LOC_Os10g21550
Os.47481.1.S1_at--840--1911Chr10:10702630..10702654 (25 bp)
ACGGGAGCGGCGTGGATATCAACGG
LOC_Os10g21550
Os.47481.1.S1_at--514--9291Chr10:10702747..10702771 (25 bp)
TCCGTCTCCGATGGCTGCGGATGCG
LOC_Os10g21550
Os.47481.1.S1_at--514--3831Chr10:10702761..10702785 (25 bp)
CTGCGGATGCGCGTGGAAAGATGAT
NONE
Os.47481.1.S1_at--115--3891NONE
CGAGTGGGCCCCACACCGTGTTTCA
NONE
Os.47481.1.S1_at--487--4191Chr10:10702821..10702840 (20 bp)
CCGTGTTTCACCCAAAATTACCATG
NONE
Os.47481.1.S1_at--631--7411NONE
GTGTTTCACCCAAAATTACCATGTT
NONE
Os.47481.1.S1_at--380--2253Chr11:5055285..5055626 (25 bp)
AAATTACCATGTTGGCATGCCACGT
NONE
Os.47481.1.S1_at--774--4971Chr10:10702844..10702868 (25 bp)
GCATGCCACGTAGGTAAAAAGTAAC
NONE
Os.47481.1.S1_at--329--7051NONE
GTAACGAATAATCAAGAGAGCACCT
NONE
Os.47481.1.S1_at--411--6011Chr10:10702879..10702903 (25 bp)
GAGAGCACCTATTTAGAAGGGACAA
NONE
Target Sequence 
GCGGCACTGACGACGCGCTCATCGACGGGAGCGGCGTGGATATCAACGGGGTGGCGGGGACGACGAGGTGGCCACGGAGA
GCCGGCTCCGGCGGTGGCCGGGNATTAACGGGGTCGTCGCGGCGACCACGCCGACGACTTCTCCGTCTCCGATGGCTGCG
GATGCGCGTGGAAAGATGATGGGGAGGGAGACTGACGAGTGGGCCCCACACCGTGTTTCACCCAAAATTACCATGTTGGC
ATGCCACGTAGGTAAAAAGTAACGAATAATCAAGAGAGCACCTATTTAGAAGGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis