Browse Element(s) Details


OsAffx.30481.1.S1_at

Description tigr:9638.m01800
TID=OsAffx.30481.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2154011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed
LOC_Os10g21574NANA10+10720535..10720968hypothetical protein
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30481.1.S1_at--551--8751Chr10:10695739..10695763 (25 bp)
TGTACCGGCAGCAGATGTCCATGGT
LOC_Os10g21540
OsAffx.30481.1.S1_at--842--8151Chr10:10695961..10695985 (25 bp)
GGAAATGGATGGACTCGCTGCTAAA
LOC_Os10g21540
OsAffx.30481.1.S1_at--878--5591Chr10:10695986..10696010 (25 bp)
GAAATACCAGGACGCGCTCCATGGA
LOC_Os10g21540
OsAffx.30481.1.S1_at--285--651Chr10:10696032..10696056 (25 bp)
ATGCAGGTGGGCACCTTCATCGCCA
LOC_Os10g21540
OsAffx.30481.1.S1_at--242--9731Chr10:10696057..10696081 (25 bp)
TCAAGGACCTTGACAGCATCAGGGT
LOC_Os10g21540
OsAffx.30481.1.S1_at--370--2151Chr10:10696069..10696093 (25 bp)
ACAGCATCAGGGTGCTCGTCGAACA
LOC_Os10g21540
OsAffx.30481.1.S1_at--749--2471Chr10:10696090..10696114 (25 bp)
AACACCTTGAGGTTCAGATCAGCTC
LOC_Os10g21540
OsAffx.30481.1.S1_at--476--10531Chr10:10696102..10696126 (25 bp)
TTCAGATCAGCTCCATGGCCGATTC
LOC_Os10g21540
OsAffx.30481.1.S1_at--900--871Chr10:10696116..10696140 (25 bp)
ATGGCCGATTCCGTGGAGTTCGCAG
LOC_Os10g21540
OsAffx.30481.1.S1_at--632--91Chr10:10696123..10696147 (25 bp)
ATTCCGTGGAGTTCGCAGAGCGCGA
LOC_Os10g21540
OsAffx.30481.1.S1_at--47--8891Chr10:10696159..10696183 (25 bp)
TGAGGTTCGGCATAGATGAGGTCAA
LOC_Os10g21540
Target Sequence 
TGTACCGGCAGCAGATGTCCATGGTGGGCAAGCTCCGGCGCCGGAAGCGCCGCCTGGACCGCCGCCTCCGCTCCGTCCGC
GTGTGGCGCCGCGTCTCCGGCATCGTCTTCCTCACCTCCTTTGCCGCGCTGCTCGTCTGCTCGGTCGTCGCCGCGGCCAT
CGCCGCGCCGCCCGTCGCGGCCGCGCTCGCCGCCGCGGCATCCATGCCGGTGGGCTCCGCGGGGAAATGGATGGACTCGC
TGCTAAAGAAATACCAGGACGCGCTCCATGGACACAAGGAGGTGGTGAGCGCAATGCAGGTGGGCACCTTCATCGCCATC
AAGGACCTTGACAGCATCAGGGTGCTCGTCGAACACCTTGAGGTTCAGATCAGCTCCATGGCCGATTCCGTGGAGTTCGC
AGAGCGCGACGAGGAGGCGGTGAGGTTCGGCATAGATGAGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis