Browse Element(s) Details


Os.6124.1.S1_a_at

Description gb:AK072682.1
DB_XREF= gi:32982705
TID=Os.6124.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OSJNBb0076H04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135B15, full insert sequence.
FL= gb:AK072682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2156011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed
LOC_Os10g21574NANA10+10720535..10720968hypothetical protein
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21600OsAffx.30482.1.S1_at10/1110+10727187..10728539hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6124.1.S1_a_at--562--5571Chr10:10704773..10704797 (25 bp)
GAAAGTACTGGTGTTGTGGATCATT
LOC_Os10g21560
Os.6124.1.S1_a_at--639--6431Chr10:10704755..10704779 (25 bp)
GATCATTATAGTCCATTGCATAGCA
LOC_Os10g21560
Os.6124.1.S1_a_at--1103--291Chr10:10704736..10704760 (25 bp)
ATAGCATTTCTATACTCTGTACAGG
LOC_Os10g21560
Os.6124.1.S1_a_at--223--9871Chr10:10704717..10704741 (25 bp)
TACAGGAAGCATGACATTACGCCAT
LOC_Os10g21560
Os.6124.1.S1_a_at--61--1514Chr12:6631622..6631645 (23 bp)
ATTACGCCATGCTATTTTGATACGG
NONE
Os.6124.1.S1_a_at--44--171Chr10:10704689..10704713 (25 bp)
ATTTTGATACGGACTGGTCGCCTCA
LOC_Os10g21560
Os.6124.1.S1_a_at--488--7791Chr10:10704674..10704698 (25 bp)
GGTCGCCTCAACAGATTTATGCCAG
LOC_Os10g21560
Os.6124.1.S1_a_at--8--5851Chr10:10704533..10704557 (25 bp)
GACCTTGATGATTCTGTCAAACTGA
LOC_Os10g21560
Os.6124.1.S1_a_at--1069--8891Chr10:10704506..10704530 (25 bp)
TGAGCTACCTTGATTCCATTCTTGA
LOC_Os10g21560
Os.6124.1.S1_a_at--375--8251Chr10:10704428..10704452 (25 bp)
GGCAGTAGTTTCTGATTATCACCAG
LOC_Os10g21560
Os.6124.1.S1_a_at--736--10171Chr10:10704412..10704436 (25 bp)
TATCACCAGGTGCTCTCATTTGTAA
LOC_Os10g21560
Target Sequence 
GAAAGTACTGGTGTTGTGGATCATTATAGTCCATTGCATAGCATTTCTATACTCTGTACAGGAAGCATGACATTACGCCA
TGCTATTTTGATACGGACTGGTCGCCTCAACAGATTTATGCCAGATCTTCTGATAGAACATAGTCAAAGAAGACTGCAAG
TTTTGAAGCAACAATGACCAACAATACTACAAACTGTGGAAAGTTACATTTTTGTTTTGTTCATAGTGTGAAGATATCAT
GACCTTGATGATTCTGTCAAACTGAAGTGAGCTACCTTGATTCCATTCTTGATTGATAGGGTCAGATATTCACTGATACC
TGTGTTAGTTCAGTGAAATGAGGATGGCAGTAGTTTCTGATTATCACCAGGTGCTCTCATTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6124.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis