Browse Element(s) Details


OsAffx.8230.1.S1_at

Description gb:NM_196012.1
DB_XREF= gi:37533383
TID=OsAffx.8230.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0076H04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2150011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21460Os.46522.1.S1_a_at11/1110+10656872..10661284expressed protein
LOC_Os10g21470Os.46446.3.S1_x_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S2_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S1_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8230.1.S1_at--1020--6651Chr10:10679962..10679986 (25 bp)
GTTGACGGCGGACGGCGAACGCGGA
LOC_Os10g21500
OsAffx.8230.1.S1_at--1101--5411Chr10:10679946..10679970 (25 bp)
GAACGCGGACCCACGGCCATCGGCG
LOC_Os10g21500
OsAffx.8230.1.S1_at--1152--7792Chr11:12106890..12107036 (24 bp)
GGTCAGTGGCGACGTGGAGCGGGCA
NONE
OsAffx.8230.1.S1_at--990--8211Chr10:10679880..10679904 (25 bp)
GGCACGAAGGGAGTAGCGGCTGGAG
LOC_Os10g21500
OsAffx.8230.1.S1_at--524--3231Chr10:10679826..10679850 (25 bp)
CAACTCAACCCTAACTCTTCGTGGG
LOC_Os10g21500
OsAffx.8230.1.S1_at--1002--5111Chr10:10679822..10679846 (25 bp)
TCAACCCTAACTCTTCGTGGGCTGT
LOC_Os10g21500
OsAffx.8230.1.S1_at--1159--3711Chr10:10679816..10679840 (25 bp)
CTAACTCTTCGTGGGCTGTTACTAT
LOC_Os10g21500
OsAffx.8230.1.S1_at--82--3751Chr10:10679812..10679836 (25 bp)
CTCTTCGTGGGCTGTTACTATTGGA
LOC_Os10g21500
OsAffx.8230.1.S1_at--228--3651Chr10:10679810..10679834 (25 bp)
CTTCGTGGGCTGTTACTATTGGATT
LOC_Os10g21500
OsAffx.8230.1.S1_at--670--9411Chr10:10679808..10679832 (25 bp)
TCGTGGGCTGTTACTATTGGATTTG
LOC_Os10g21500
OsAffx.8230.1.S1_at--907--8331Chr10:10679803..10679827 (25 bp)
GGCTGTTACTATTGGATTTGGGCCA
LOC_Os10g21500
Target Sequence
GTTGACGGCGGACGGCGAACGCGGACCCACGGCCATCGGCGCGGCGCAGGCGGCGGTCAGTGGCGACGTGGAGCGGGCAT
CGGGCACGAAGGGAGTAGCGGCTGGAGGTGGAAGCGCTCCAGCCTCCAGGCTCCCCCAACTCAACCCTAACTCTTCGTGG
GCTGTTACTATTGGATTTGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis