Browse Element(s) Details


Os.46446.3.S1_x_at

Description gb:NM_196009.1
DB_XREF= gi:37533377
TID=Os.46446.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46446 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBb0076H04.15), mRNA.
PROD=putative membrane-associated salt-inducibleprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2147011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21410NANA10+10633568..10635640hypothetical protein
LOC_Os10g21420NANA10+10637912..10639326retrotransposon, putative, centromere-specific
LOC_Os10g21430Os.52238.1.S1_at3/1110+10643508..10644154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21440NANA10+10649013..10649660retrotransposon, putative, centromere-specific
LOC_Os10g21450NANA10+10651885..10653451hypothetical protein
LOC_Os10g21460Os.46522.1.S1_a_at11/1110+10656872..10661284expressed protein
LOC_Os10g21470Os.46446.3.S1_x_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S2_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S1_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46446.3.S1_x_at--307--2771Chr10:10665333..10665357 (25 bp)
AAGACGTACACGGTGCTCATCGAGC
LOC_Os10g21470
Os.46446.3.S1_x_at--639--5931Chr10:10665221..10665336 (25 bp)
GAGCATCTCGCGAACGTAGGGAAAT
LOC_Os10g21470
Os.46446.3.S1_x_at--995--9531Chr10:10664399..10664423 (25 bp)
TCTAGTTCAGAAATGCTCCAGGGCT
LOC_Os10g21470
Os.46446.3.S1_x_at--319--5671Chr10:10664369..10664393 (25 bp)
GACATCAGTGATGACCCGAATTCTT
LOC_Os10g21470
Os.46446.3.S1_x_at--72--8171Chr10:10664333..10664357 (25 bp)
GGAAAATTTCATCGTGCTTCGCCGA
LOC_Os10g21470
Os.46446.3.S1_x_at--1078--4871Chr10:10664318..10664342 (25 bp)
GCTTCGCCGACCTATATTTTTGGAA
LOC_Os10g21470
Os.46446.3.S1_x_at--872--2951Chr10:10663774..10663798 (25 bp)
AATGTTGTTACGTACACTGCCCTTA
LOC_Os10g21470
Os.46446.3.S1_x_at--371--1991Chr10:10663759..10663783 (25 bp)
ACTGCCCTTATGAGTGCCTATTTTC
LOC_Os10g21470
Os.46446.3.S1_x_at--854--9771Chr10:10663718..10663742 (25 bp)
TAAGGCTCTCCAACTATTCTTGCAA
LOC_Os10g21470
Os.46446.3.S1_x_at--43--10151Chr10:10663479..10663701 (25 bp)
TATCTGCATGCCCAGCTGAATCCTT
LOC_Os10g21470
Os.46446.3.S1_x_at--36--1511Chr10:10663452..10663476 (25 bp)
AGCACCTATTGCTGCCTGAACATGA
LOC_Os10g21470
Target Sequence 
AAGACGTACACGGTGCTCATCGAGCATCTCGCGAACGTAGGGAAATTTGAAGCTACTATGGAAATTATGGACAAGATGCA
AGAAGCTGGTGTAGAACCAGATAAAGCACTCTGTAATATTCTAGTTCAGAAATGCTCCAGGGCTGGTGAGACATCAGTGA
TGACCCGAATTCTTCAATACATGAAGGAAAATTTCATCGTGCTTCGCCGACCTATATTTTTGGAAGCACTTGAAGCTCTA
AAAGCTAATGACAAGAATGTTGTTACGTACACTGCCCTTATGAGTGCCTATTTTCAAGATGGGAAAGTTGATAAGGCTCT
CCAACTATTCTTGCAAATGAGTGCTAATGGAGTATCTGCATGCCCAGCTGAATCCTTCCAGCACCTATTGCTGCCTGAAC
ATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46446.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis