Browse Element(s) Details


Os.46446.1.S2_at

Description gb:AK101176.1
DB_XREF= gi:32986385
TID=Os.46446.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBb0076H04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029A13, full insert sequence.
FL= gb:AK101176.1 gb:AK099994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2147011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21410NANA10+10633568..10635640hypothetical protein
LOC_Os10g21420NANA10+10637912..10639326retrotransposon, putative, centromere-specific
LOC_Os10g21430Os.52238.1.S1_at3/1110+10643508..10644154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21440NANA10+10649013..10649660retrotransposon, putative, centromere-specific
LOC_Os10g21450NANA10+10651885..10653451hypothetical protein
LOC_Os10g21460Os.46522.1.S1_a_at11/1110+10656872..10661284expressed protein
LOC_Os10g21470Os.46446.3.S1_x_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S2_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S1_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46446.1.S2_at--783--1431Chr10:10660370..10660394 (25 bp)
AAAGTCGCACCGTGTGAGCCCTTGA
LOC_Os10g21470
Os.46446.1.S2_at--963--2991Chr10:10660335..10660359 (25 bp)
AATGACGCCTTGGAGTGGGAATCAC
LOC_Os10g21470
Os.46446.1.S2_at--913--5171Chr10:10660294..10660318 (25 bp)
GAAGGATTTGGTCTGGAACCCTCTA
LOC_Os10g21470
Os.46446.1.S2_at--1077--9231Chr10:10660259..10660283 (25 bp)
TCCTTGACCTCTGTGGCTTTGGTGA
LOC_Os10g21470
Os.46446.1.S2_at--109--4891Chr10:10660244..10660268 (25 bp)
GCTTTGGTGATTGTGCGTCATCGGA
LOC_Os10g21470
Os.46446.1.S2_at--569--7771Chr10:10660143..10660167 (25 bp)
GGTGCCACGAAAACCGTGCCATTAT
LOC_Os10g21470
Os.46446.1.S2_at--1128--9771Chr10:10660116..10660140 (25 bp)
TAAGTTCGGTTTTCACAAGCTAAAT
LOC_Os10g21470
Os.46446.1.S2_at--892--2691Chr10:10660100..10660124 (25 bp)
AAGCTAAATTGGTCCGTGACACAGA
LOC_Os10g21470
Os.46446.1.S2_at--1057--5591Chr10:10660083..10660107 (25 bp)
GACACAGACGGCGTTCGGGCTAATT
LOC_Os10g21470
Os.46446.1.S2_at--668--8611Chr10:10660027..10660051 (25 bp)
TGGTGTCGTGCATCAGGTAAACTGT
LOC_Os10g21470
Os.46446.1.S2_at--733--6091Chr10:10659995..10660019 (25 bp)
GGTCCTTCCCCACAAGATAGAACAA
LOC_Os10g21470
Target Sequence 
AAAGTCGCACCGTGTGAGCCCTTGAGGAGGAAGAAAATGACGCCTTGGAGTGGGAATCACAAGACATGGAGCGGCTGAAG
GATTTGGTCTGGAACCCTCTATGCTGCCTGCTCCTTGACCTCTGTGGCTTTGGTGATTGTGCGTCATCGGATGCTGCAAG
AATGGGATTAAACAAGACCAACTATTTACAAACGAGACGCATGCAACCAAATCGAAGGACATAATTAGGTGCCACGAAAA
CCGTGCCATTATTTTAAGTTCGGTTTTCACAAGCTAAATTGGTCCGTGACACAGACGGCGTTCGGGCTAATTCTAGGGGC
TAATTGCTCTTTACAGAAAATTATGGTGTCGTGCATCAGGTAAACTGTCTTTTTTGGTCCTTCCCCACAAGATAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46446.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis