Browse Element(s) Details


OsAffx.30480.1.S1_at

Description tigr:9638.m01795
TID=OsAffx.30480.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21450NANA10+10651885..10653451hypothetical protein
LOC_Os10g21460Os.46522.1.S1_a_at11/1110+10656872..10661284expressed protein
LOC_Os10g21470Os.46446.3.S1_x_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S2_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S1_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30480.1.S1_at--949--8551Chr10:10676535..10676559 (25 bp)
TGGAGGCAACACATCGAGCGGCTAC
LOC_Os10g21490
OsAffx.30480.1.S1_at--684--6271Chr10:10676356..10676380 (25 bp)
GATGTCATTGAGTATTTCCCTTCTG
LOC_Os10g21490
OsAffx.30480.1.S1_at--294--31Chr10:10676326..10676350 (25 bp)
ATTGGCACTCCTATTCTCTGTACGG
LOC_Os10g21490
OsAffx.30480.1.S1_at--975--5071Chr10:10676237..10676261 (25 bp)
GCAGCCTGGCTTTTCAATTTGGATT
LOC_Os10g21490
OsAffx.30480.1.S1_at--1009--8611Chr10:10676197..10676221 (25 bp)
TGGTGAGAAGTCCTTCAGCCGCTTC
LOC_Os10g21490
OsAffx.30480.1.S1_at--528--1671Chr10:10676181..10676205 (25 bp)
AGCCGCTTCGTCTTTATTAGTTTCA
LOC_Os10g21490
OsAffx.30480.1.S1_at--851--7791Chr10:10676149..10676173 (25 bp)
GGTCCTATACACTCTTCACTTGGAG
LOC_Os10g21490
OsAffx.30480.1.S1_at--745--5311Chr10:10676113..10676137 (25 bp)
GAAGGGATACTCTGCAGCACCTTTG
LOC_Os10g21490
OsAffx.30480.1.S1_at--787--6271Chr10:10676076..10676100 (25 bp)
GATGTCAGTAATGTCACCCTGTTCC
LOC_Os10g21490
OsAffx.30480.1.S1_at--495--10391Chr10:10676018..10676042 (25 bp)
TTTTCTGGATCTACTTTGTGCTCGT
LOC_Os10g21490
OsAffx.30480.1.S1_at--484--5671Chr10:10675986..10676009 (24 bp)
GACATCTGTATGCTTGGGCTACGGC
LOC_Os10g21490
Target Sequence
TGGAGGCAACACATCGAGCGGCTACCAGCAGAGATAAACCCTCTGCACCTCTACTGAAGAAGGAGGATAACATCTGGGAG
AAAAGGCAGATGTCATTGAGTATTTCCCTTCTGACTCCATTGGCACTCCTATTCTCTGTACGGCCACTCATACCTGCTGA
ATATGATCATTACATTTTGATGGCCTTCATTGCCATTTGGGGATTGGGCAGCCTGGCTTTTCAATTTGGATTGTTTGGAT
CTAATTCTGGTGAGAAGTCCTTCAGCCGCTTCGTCTTTATTAGTTTCACTGCCCTGGTCCTATACACTCTTCACTTGGAG
ATGATGGAAGCGAAGGGATACTCTGCAGCACCTTTGTCACCATTGGCAGATGTCAGTAATGTCACCCTGTTCCCAGTGGT
ACTGGATGATCAAACTTGGACAGTGATTTTCTGGATCTACTTTGTGCTCGTGCTTTCCGGACATCTGTATGCTTGGGCTA
CGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis