Browse Element(s) Details


Os.46522.1.S1_a_at

Description gb:AK068930.1
DB_XREF= gi:32978954
TID=Os.46522.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0076H04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001K18, full insert sequence.
FL= gb:AK068930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21410NANA10+10633568..10635640hypothetical protein
LOC_Os10g21420NANA10+10637912..10639326retrotransposon, putative, centromere-specific
LOC_Os10g21430Os.52238.1.S1_at3/1110+10643508..10644154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21440NANA10+10649013..10649660retrotransposon, putative, centromere-specific
LOC_Os10g21450NANA10+10651885..10653451hypothetical protein
LOC_Os10g21460Os.46522.1.S1_a_at11/1110+10656872..10661284expressed protein
LOC_Os10g21470Os.46446.3.S1_x_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S2_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21470Os.46446.1.S1_at11/1110+10659908..10666006pentatricopeptide, putative, expressed
LOC_Os10g21479OsAffx.21697.1.S1_at2/1110+10671675..10672133hypothetical protein
LOC_Os10g21490OsAffx.30480.1.S1_at11/1110+10675877..10678471hypothetical protein
LOC_Os10g21500OsAffx.8230.1.S1_at11/1110+10679773..10680048hypothetical protein
LOC_Os10g21510NANA10+10682598..10685503Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46522.1.S1_a_at--244--10531Chr10:10660316..10660340 (25 bp)
TTCAGCCGCTCCATGTCTTGTGATT
LOC_Os10g21460
Os.46522.1.S1_a_at--813--4331Chr10:10660326..10660350 (25 bp)
CCATGTCTTGTGATTCCCACTCCAA
LOC_Os10g21460
Os.46522.1.S1_a_at--482--4271Chr10:10660365..10660604 (25 bp)
CCTCCTCAAGGGCTCACACGAAAGT
LOC_Os10g21460
Os.46522.1.S1_a_at--457--5951Chr10:10660611..10660635 (25 bp)
GAGCAAGCTGGAAATGACTGCATTA
LOC_Os10g21460
Os.46522.1.S1_a_at--966--4931Chr10:10660630..10660654 (25 bp)
GCATTATGGAGATATTGGCGTCACT
LOC_Os10g21460
Os.46522.1.S1_a_at--11--10231Chr10:10660642..10660663 (22 bp)
TATTGGCGTCACTTCAATCTCGATG
LOC_Os10g21460
Os.46522.1.S1_a_at--588--611Chr10:10660747..10660771 (25 bp)
ATGCTAGCCCTAACCCATCCAGGGA
LOC_Os10g21460
Os.46522.1.S1_a_at--968--2591Chr10:10660758..10660782 (25 bp)
AACCCATCCAGGGAGCAGTTAGTGG
LOC_Os10g21460
Os.46522.1.S1_a_at--1026--5931Chr10:10660770..10660794 (25 bp)
GAGCAGTTAGTGGATGCTGTCCAGA
LOC_Os10g21460
Os.46522.1.S1_a_at--42--631Chr10:10660783..10660807 (25 bp)
ATGCTGTCCAGAGGCACTTTGTGTC
LOC_Os10g21460
Os.46522.1.S1_a_at--118--5371Chr10:10660974..10660998 (25 bp)
GAAGACAAACGTGAAAGTGGCCTGA
LOC_Os10g21460
Target Sequence 
TTCAGCCGCTCCATGTCTTGTGATTCCCACTCCAAAGCTTCATTTTCTTCCTCCTCAAGGGCTCACACGAAAGTGGACCT
GAGCAAGCTGGAAATGACTGCATTATGGAGATATTGGCGTCACTTCAATCTCGATGCTAGCCCTAACCCATCCAGGGAGC
AGTTAGTGGATGCTGTCCAGAGGCACTTTGTGTCNCAGCAATTGGATGAGTTGCAGGTCATCGTNGGTTTCGTGCAGGCT
GCAAAGAGGCTGAAGACAAACGTGAAAGTGGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46522.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis