Browse Element(s) Details


OsAffx.30482.1.S1_at

Description tigr:9638.m01808
TID=OsAffx.30482.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2160010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed
LOC_Os10g21574NANA10+10720535..10720968hypothetical protein
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21600OsAffx.30482.1.S1_at10/1110+10727187..10728539hypothetical protein
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30482.1.S1_at--740--2491Chr10:10727219..10727243 (25 bp)
AACAGGGCTGCAGATTGGAAGAGAT
LOC_Os10g21600
OsAffx.30482.1.S1_at--254--5031Chr10:10727228..10727252 (25 bp)
GCAGATTGGAAGAGATCGGTCTAAC
LOC_Os10g21600
OsAffx.30482.1.S1_at--277--2791Chr10:10727237..10727261 (25 bp)
AAGAGATCGGTCTAACGAGCAGGCG
LOC_Os10g21600
OsAffx.30482.1.S1_at--261--3911Chr10:10727244..10727268 (25 bp)
CGGTCTAACGAGCAGGCGGACGGAC
LOC_Os10g21600
OsAffx.30482.1.S1_at--973--5731Chr10:10727262..10727286 (25 bp)
GACGGACGTCTCTGGCCCACGCGAA
LOC_Os10g21600
OsAffx.30482.1.S1_at--596--7151Chr10:10727269..10727293 (25 bp)
GTCTCTGGCCCACGCGAATAGTTTG
LOC_Os10g21600
OsAffx.30482.1.S1_at--1042--9451Chr10:10727272..10727296 (25 bp)
TCTGGCCCACGCGAATAGTTTGTGA
LOC_Os10g21600
OsAffx.30482.1.S1_at--451--8411Chr10:10727275..10727299 (25 bp)
GGCCCACGCGAATAGTTTGTGACAG
LOC_Os10g21600
OsAffx.30482.1.S1_at--932--4571Chr10:10727282..10727306 (25 bp)
GCGAATAGTTTGTGACAGCCCATGT
LOC_Os10g21600
OsAffx.30482.1.S1_at--1--5651NONE
GACAGCCCATGTCACATTATGGAGA
NONE
OsAffx.30482.1.S1_at--1070--4531Chr10:10728376..10728457 (25 bp)
GCCCATGTCACATTATGGAGATTAT
LOC_Os10g21600
Target Sequence 
AACAGGGCTGCAGATTGGAAGAGATCGGTCTAACGAGCAGGCGGACGGACGTCTCTGGCCCACGCGAATAGTTTGTGACA
GCCCATGTCACATTATGGAGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis