Browse Element(s) Details


Os.49317.1.S1_at

Description gb:AK106326.1
DB_XREF= gi:32991535
TID=Os.49317.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F02, full insert sequence.
FL= gb:AK106326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2159011/11mannitol transporter, putative, expressed
LOC_Os07g148501/11Cellulose synthase A catalytic subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21540OsAffx.30481.1.S1_at11/1110+10695171..10698114hypothetical protein
LOC_Os10g21550Os.47481.1.S1_at3/1110+10702563..10702784hypothetical protein
LOC_Os10g21560Os.6124.1.S1_a_at11/1110+10704295..10709217No apical meristem protein, expressed
LOC_Os10g21574NANA10+10720535..10720968hypothetical protein
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21600OsAffx.30482.1.S1_at10/1110+10727187..10728539hypothetical protein
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49317.1.S1_at--549--5951Chr10:10723799..10723823 (25 bp)
GAGCACAAGAGTTGTAGCTTCCCTT
LOC_Os10g21590
Os.49317.1.S1_at--1064--1531Chr10:10723784..10723808 (25 bp)
AGCTTCCCTTGTCTTGCTCAAGTGT
LOC_Os10g21590
Os.49317.1.S1_at--896--4832Chr07:8497319..8497338 (20 bp)
GCTCAAGTGTTCAATTTTTTGTGTG
LOC_Os07g14850
Os.49317.1.S1_at--978--10351Chr10:10723754..10723778 (25 bp)
TTTTTGTGTGCGTTTTTCAGCTCGT
LOC_Os10g21590
Os.49317.1.S1_at--886--7291Chr10:10723747..10723771 (25 bp)
GTGCGTTTTTCAGCTCGTGTGTGAT
LOC_Os10g21590
Os.49317.1.S1_at--369--7831Chr10:10723585..10723609 (25 bp)
GGTAAACTACATTAGAACACCTAAT
LOC_Os10g21590
Os.49317.1.S1_at--742--8831Chr10:10723511..10723535 (25 bp)
TGATTTACCGCCGATCTCTGTCTCG
LOC_Os10g21590
Os.49317.1.S1_at--938--6411Chr10:10723499..10723523 (25 bp)
GATCTCTGTCTCGTTCAGCATGTAC
LOC_Os10g21590
Os.49317.1.S1_at--398--10531Chr10:10723486..10723510 (25 bp)
TTCAGCATGTACGTGTTAGCGGGAT
LOC_Os10g21590
Os.49317.1.S1_at--857--3971Chr10:10723475..10723499 (25 bp)
CGTGTTAGCGGGATTCACGTGTCAC
LOC_Os10g21590
Os.49317.1.S1_at--802--131Chr10:10723364..10723388 (25 bp)
ATTAAATTGCAGACACTGGTGTGAT
LOC_Os10g21590
Target Sequence 
GAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCGTTTTTCAGCTCGTGTGTGATTGA
GAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAG
TACGCCGTCGGGTGCTCCATCATCGGNTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATT
GACATGTNATTATAACNTTTTCNATATCGGNGATTTTAGTGAGATCANTGATTTACCGCCGATCTCTGTCTCGTTCAGCA
TGTACGTGTTAGCGGGATTCACGTGTCACNTNAGTGCNGTGTGTGTGCNCGTCTTTCATGTAATCNCGCGCGAAAAAATA
AAGAAAAAGAAGGAAAATTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis