Browse Element(s) Details


OsAffx.17023.1.S1_at

Description tigr:9636.m01637
TID=OsAffx.17023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1630011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16270NANA8+9925915..9929247retrotransposon protein, putative, unclassified
LOC_Os08g16280NANA8+9930028..9934458retrotransposon protein, putative, unclassified
LOC_Os08g16290Os.10731.2.A1_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16290Os.45173.1.S1_x_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16300OsAffx.17023.1.S1_at11/118+9947192..9948950hypothetical protein
LOC_Os08g16300Os.53644.1.S1_at1/118+9947192..9948950hypothetical protein
LOC_Os08g16310Os.9691.1.S1_at2/118+9949447..9950942hypothetical protein
LOC_Os08g16320OsAffx.5840.1.S1_x_at1/118+9952630..9954132Cytochrome P450 family protein
LOC_Os08g16330Os.4930.1.S1_at11/118+9958642..9959397expressed protein
LOC_Os08g16340OsAffx.23366.1.S1_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16340OsAffx.23366.2.S1_s_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16350Os.17702.2.S1_x_at11/118+9970633..9973632expressed protein
LOC_Os08g16350Os.17702.1.S1_at10/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.1.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.2.S1_x_at3/118+9970633..9973632expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17023.1.S1_at--521--10712Chr08:9948892..9948913 (22 bp)
TTGCGGCCGCAAGACACGCGCTAGG
NONE
OsAffx.17023.1.S1_at--1158--951Chr08:9948846..9948870 (25 bp)
AGGACTGCGCGACAATCTAGGCTAT
LOC_Os08g16300
OsAffx.17023.1.S1_at--740--851Chr08:9948823..9948847 (25 bp)
ATGGCAGCGGCAGCTTTCCTAGGGA
LOC_Os08g16300
OsAffx.17023.1.S1_at--486--8371Chr08:9948731..9948755 (25 bp)
GGCGATACGGGATGTGACCTCGTCT
LOC_Os08g16300
OsAffx.17023.1.S1_at--628--8491Chr08:9947444..9947468 (25 bp)
TGGCACCTTGCCGAAGCGTGAAAAA
LOC_Os08g16300
OsAffx.17023.1.S1_at--82--2451Chr08:9947423..9947447 (25 bp)
AAAATGGCTTGGTCTCGAGCGACTG
LOC_Os08g16300
OsAffx.17023.1.S1_at--172--3371Chr08:9947387..9947411 (25 bp)
CACCGGCACGAGTAGCAGTGGACGA
LOC_Os08g16300
OsAffx.17023.1.S1_at--453--4071Chr08:9947365..9947389 (25 bp)
CGAGGTGACGGCAACGGTGATCTTC
LOC_Os08g16300
OsAffx.17023.1.S1_at--653--10631Chr08:9947343..9947367 (25 bp)
TTCGAGCCCCATCTGGCGGAGGTCA
LOC_Os08g16300
OsAffx.17023.1.S1_at--990--9431Chr08:9947321..9947345 (25 bp)
TCAGGGCCTAGGTAGCCGGAACACA
LOC_Os08g16300
OsAffx.17023.1.S1_at--136--10611Chr08:9947277..9947301 (25 bp)
TTCTGTGGCTCACTGGCGTGGCATT
LOC_Os08g16300
Target Sequence 
TTGCGGCCGCAAGACACGCGCTAGGGATGGCGGAGGACTGCGCGACAATCTAGGCTATGGCAGCGGCAGCTTTCCTAGGG
AGGAAACAGGTCAGCGGCGGGCGACGCTTAGCAGTGCGGCAGGCGGCAATGGTGTGCAAGACGAGGGTGGCGATACGGGA
TGTGACCTCGTCTTCCATCGACGCGCGGGAGGGCTGCCGGACGTCGTCGTCGTCGTCGTCCTTGATGTGGCCGGGGAAGA
CAGCATCGTCGGCCGGCTGCTTGGCACCTTGCCGAAGCGTGAAAAATGGCTTGGTCTCGAGCGACTGGCAAGGGGCGCCA
CCGGCACGAGTAGCAGTGGACGAGGTGACGGCAACGGTGATCTTCGAGCCCCATCTGGCGGAGGTCAGGGCCTAGGTAGC
CGGAACACATGCAGGGAAGCCAGGCCCCTTCTGTGGCTCACTGGCGTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis