Browse Element(s) Details


Os.17702.1.S1_at

Description gb:AK067503.1
DB_XREF= gi:32977521
TID=Os.17702.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108L16, full insert sequence.
FL= gb:AK067503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1635010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16300OsAffx.17023.1.S1_at11/118+9947192..9948950hypothetical protein
LOC_Os08g16300Os.53644.1.S1_at1/118+9947192..9948950hypothetical protein
LOC_Os08g16310Os.9691.1.S1_at2/118+9949447..9950942hypothetical protein
LOC_Os08g16320OsAffx.5840.1.S1_x_at1/118+9952630..9954132Cytochrome P450 family protein
LOC_Os08g16330Os.4930.1.S1_at11/118+9958642..9959397expressed protein
LOC_Os08g16340OsAffx.23366.1.S1_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16340OsAffx.23366.2.S1_s_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16350Os.17702.2.S1_x_at11/118+9970633..9973632expressed protein
LOC_Os08g16350Os.17702.1.S1_at10/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.1.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.2.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16360NANA8+9978264..9978593expressed protein
LOC_Os08g16370NANA8+9979651..9984243transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17702.1.S1_at--537--5231Chr08:9972316..9972340 (25 bp)
GAATAGATCGAATCAACGCAGTTGA
LOC_Os08g16350
Os.17702.1.S1_at--752--4931Chr08:9972270..9972294 (25 bp)
GCTTGTCTCTGGCTTTGCCTTCTAC
LOC_Os08g16350
Os.17702.1.S1_at--282--4891Chr08:9972259..9972283 (25 bp)
GCTTTGCCTTCTACTGATTGGTACA
LOC_Os08g16350
Os.17702.1.S1_at--108--2851Chr08:9972185..9972207 (23 bp)
AAGTCTCATATAGCATTTAAGGTTC
LOC_Os08g16350
Os.17702.1.S1_at--575--10011NONE
TAGCATTTAAGGTTCTCTCATATGT
NONE
Os.17702.1.S1_at--941--5851Chr08:9970956..9970980 (25 bp)
GACCAACTCCGCCATGGATGTAGCT
LOC_Os08g16350
Os.17702.1.S1_at--7--9751Chr08:9970845..9970869 (25 bp)
TCAATATGTCGCAACCTCCTCTATA
LOC_Os08g16350
Os.17702.1.S1_at--774--5151Chr08:9970835..9970859 (25 bp)
GCAACCTCCTCTATATTCGTAGTTT
LOC_Os08g16350
Os.17702.1.S1_at--711--9751Chr08:9970799..9970823 (25 bp)
TAATCTGATCCTAGGGTGCAACATA
LOC_Os08g16350
Os.17702.1.S1_at--16--3711Chr08:9970789..9970813 (25 bp)
CTAGGGTGCAACATATGGCGACGGA
LOC_Os08g16350
Os.17702.1.S1_at--740--10351Chr08:9970686..9970710 (25 bp)
TTTATTGGTCTCGAACCAGCCTAAT
LOC_Os08g16350
Target Sequence 
GAATAGATCGAATCAACGCAGTTGATGGATACAGTACATACTCCTTGCTTGTCTCTGGCTTTGCCTTCTACTGATTGGTA
CAGATGAGCCTGGGAAGCAAGTCCGGAGTGCTGTCAAGATCAAGAACATCAGCAAGTCTCATATAGCATTTAAGGTTCTC
TCATATGTTGGCGGGTTCCAGGGTGGAGAAGGTTGGATCCTCGGTGGAGCAGGCCAATGCGACCAACTCCGCCATGGATG
TAGCTGGCAGTGGGATTTTGACGTCGACCGTGAGTCTTCGGCACCGGCGCTGGTGGTGGTATTACGCGAGTTGGGATGTA
CCCCCTTCATCTCAATATGTCGCAACCTCCTCTATATTCGTAGTTTTAGGATTGATNTAATCTGATCCTAGGGTGCAACA
TATGGCGACGGAGGGAGTAGTCATTGGTTGCAATTTTCTTGTTTTTTTTATCAAGATGAATATGTGTATGTCTATTTCCC
ATCTGTAATTTTTATTGGTCTCGAACCAGCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis