Browse Element(s) Details


Os.9691.1.S1_at

Description gb:AK060990.1
DB_XREF= gi:32971008
TID=Os.9691.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C11, full insert sequence.
FL= gb:AK060990.1 gb:AK104291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1626011/11Cytochrome P450 family protein, expressed
LOC_Os08g163102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16240Os.15833.1.S1_at3/118+9893110..9898997retrotransposon protein, putative, unclassified
LOC_Os08g16240OsAffx.22699.1.S1_x_at3/118+9893110..9898997retrotransposon protein, putative, unclassified
LOC_Os08g16240OsAffx.18275.1.S1_x_at1/118+9893110..9898997retrotransposon protein, putative, unclassified
LOC_Os08g16240OsAffx.8201.1.S1_x_at1/118+9893110..9898997retrotransposon protein, putative, unclassified
LOC_Os08g16250NANA8+9907390..9908755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16260Os.9691.1.S1_at11/118+9915179..9916875Cytochrome P450 family protein, expressed
LOC_Os08g16270NANA8+9925915..9929247retrotransposon protein, putative, unclassified
LOC_Os08g16280NANA8+9930028..9934458retrotransposon protein, putative, unclassified
LOC_Os08g16290Os.10731.2.A1_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16290Os.45173.1.S1_x_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9691.1.S1_at--600--5511Chr08:9916523..9916547 (25 bp)
GAAAATGCGACACGTGCCGTCGCAC
LOC_Os08g16260
Os.9691.1.S1_at--315--2752Chr08:9916731..9916755 (25 bp)
AAGAAGCGTGCTGTGTAACCGAGTT
LOC_Os08g16260
Os.9691.1.S1_at--10--2693Chr08:9916734..9916758 (25 bp)
AAGCGTGCTGTGTAACCGAGTTATT
LOC_Os08g16260
Os.9691.1.S1_at--92--2611Chr08:9916747..9916771 (25 bp)
AACCGAGTTATTACTACGTTCTCAG
LOC_Os08g16260
Os.9691.1.S1_at--376--9891Chr08:9916758..9916782 (25 bp)
TACTACGTTCTCAGGAAGGCATGCG
LOC_Os08g16260
Os.9691.1.S1_at--816--4031Chr08:9916763..9916787 (25 bp)
CGTTCTCAGGAAGGCATGCGTGCGA
LOC_Os08g16260
Os.9691.1.S1_at--1082--5291Chr08:9916772..9916796 (25 bp)
GAAGGCATGCGTGCGAGTGCGACAG
LOC_Os08g16260
Os.9691.1.S1_at--464--1131Chr08:9916787..9916811 (25 bp)
AGTGCGACAGGCTCAGTGTCTTTTA
LOC_Os08g16260
Os.9691.1.S1_at--902--911Chr08:9916795..9916819 (25 bp)
AGGCTCAGTGTCTTTTATCATCCGA
LOC_Os08g16260
Os.9691.1.S1_at--1123--10151Chr08:9916810..9916834 (25 bp)
TATCATCCGACAGTATATATATGTA
LOC_Os08g16260
Os.9691.1.S1_at--1135--6891Chr08:9916832..9916856 (25 bp)
GTATGCAAAGATTTCCTACTTGAAT
LOC_Os08g16260
Target Sequence 
GAAAATGCGACACGTGCCGTCGCACAAGTTCCTGTCGTTCAACTCCGGGCCGAGGATGTGCCCCGGCAAGAACATCGCCG
TGATGCAGATGAAGATCATCGCCGCCGCCGTGGTGTGGAACTTCGACTTGGAGGTGGTGGAAGGGCAGGCCGTGGTGCCG
AAGCTGTCGTGCCTTCTGCAGATGAAGAACGGGGTCATGGTGAAGGTGAAGAAGCGTGCTGTGTAACCGAGTTATTACTA
CGTTCTCAGGAAGGCATGCGTGCGAGTGCGACAGGCTCAGTGTCTTTTATCATCCGACAGTATATATATGTATGCAAAGA
TTTCCTACTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis