Browse Element(s) Details


Os.53644.1.S1_at

Description gb:AK073710.1
DB_XREF= gi:32983733
TID=Os.53644.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061L21, full insert sequence.
FL= gb:AK073710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4399011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g011401/11Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g011401/11Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os08g163001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43960OsAffx.3507.1.S1_at8/113+24640233..24641073hypothetical protein
LOC_Os03g43970NANA3+24647394..24648828Amino acid permease family protein, expressed
LOC_Os03g43980OsAffx.25529.1.S1_at11/113+24651053..24652359amino acid permease family protein, putative
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g44000Os.51224.1.S1_at10/113+24675429..24677340expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009902biological_processchloroplast relocation
GO:0009903biological_processchloroplast avoidance movement
GO:0009904biological_processchloroplast accumulation movement
GO:0010118biological_processstomatal movement
GO:0010119biological_processregulation of stomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005737cellular_componentcytoplasm
GO:0009898cellular_componentinternal side of plasma membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0009882molecular_functionblue light photoreceptor activity
GO:0010181molecular_functionFMN binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53644.1.S1_at--946--10711Chr03:24659742..24659766 (25 bp)
TTGCATATTTCTCCGTAGTCCGTAG
LOC_Os03g43990
Os.53644.1.S1_at--760--5211Chr03:24659705..24659729 (25 bp)
GAATTCATCTTTATCACCCATTTGG
LOC_Os03g43990
Os.53644.1.S1_at--394--10851Chr03:24659684..24659708 (25 bp)
TTGGTGCATTATTGCCCACACACTA
LOC_Os03g43990
Os.53644.1.S1_at--676--1611Chr03:24659640..24659664 (25 bp)
AGCTGGTGGGTTAATCATTCTTATT
LOC_Os03g43990
Os.53644.1.S1_at--431--5031Chr03:24659590..24659614 (25 bp)
GCAGTTGACTGCTTGTGCAATTAGT
LOC_Os03g43990
Os.53644.1.S1_at--721--7511Chr03:24659537..24659561 (25 bp)
GTGGATCCACATCACATTAGTTGGC
LOC_Os03g43990
Os.53644.1.S1_at--675--5931Chr03:24659450..24659474 (25 bp)
GAGCAGGTTTGGATTTGTTTTCAGT
LOC_Os03g43990
Os.53644.1.S1_at--1118--3111Chr03:24659407..24659431 (25 bp)
AATTTTCAAACTCAATCAGCCTCCT
LOC_Os03g43990
Os.53644.1.S1_at--45--3811Chr03:24659387..24659411 (25 bp)
CTCCTTCCAGCCTGTTGAATCTAAG
LOC_Os03g43990
Os.53644.1.S1_at--465--331Chr03:24659278..24659302 (25 bp)
ATACTAAATGATGTCCCGCGCTTTG
LOC_Os03g43990
Os.53644.1.S1_at--286--48926Chr12:79749..79768 (20 bp)
GCTTTGCTGCGGGATATATGTTAGA
LOC_Os12g01140
Target Sequence 
TTGCATATTTCTCCGTAGTCCGTAGAGAAATAAGTGAGAATTCATCTTTATCACCCATTTGGTGCATTATTGCCCACACA
CTAAATGAATTATGGACATTGAAGCTGGTGGGTTAATCATTCTTATTCAATCCACAAATATTCCAGTAAATTGCAGTTGA
CTGCTTGTGCAATTAGTTTATGGGGAGGGTGTCGTGAAGCTTTTCGTGGATCCACATCACATTAGTTGGCAGTGAGATGC
TGTTGTTCCTCATAACAGAGGAGTTGTAACCATCATGTAATTATTTAGATGGGAGCAGGTTTGGATTTGTTTTCAGTGGA
CCAATCAAATATTGTAATTTTCAAACTCAATCAGCCTCCTTCCAGCCTGTTGAATCTAAGTATTAAATACTCTGATGTGT
CTGTTCTAAGAGAGATAAGACAGTCATGATGTATTGATGTTATATGTTGTCTTGTGGACAATAAATACTAAATGATGTCC
CGCGCTTTGCTGCGGGATATATGTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis