Browse Element(s) Details


Os.11590.1.S2_at

Description gb:AK070760.1
DB_XREF= gi:32980783
TID=Os.11590.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064C07, full insert sequence.
FL= gb:AK070760.1 gb:AK120708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4401010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g44000Os.51224.1.S1_at10/113+24675429..24677340expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein
LOC_Os03g44020NANA3+24698348..24699752protein kinase PINOID, putative, expressed
LOC_Os03g44030OsAffx.22879.1.S1_x_at1/113+24707230..24707601hypothetical protein
LOC_Os03g44040NANA3+24708363..24708972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11590.1.S2_at--703--6851Chr03:24684131..24684155 (25 bp)
GTTTGTTTCTGGTTAGCCTTGTAAT
LOC_Os03g44010
Os.11590.1.S2_at--827--4431Chr03:24684146..24684170 (25 bp)
GCCTTGTAATGTGACTCCGTGTTGA
LOC_Os03g44010
Os.11590.1.S2_at--639--3611NONE
CTTCCCGAAGGTACTATGCAGCTAC
NONE
Os.11590.1.S2_at--843--7071Chr03:24686177..24686201 (25 bp)
GTAATTTCAGCTTTATGCTCGCTAG
LOC_Os03g44010
Os.11590.1.S2_at--1065--9091Chr03:24686192..24686216 (25 bp)
TGCTCGCTAGCAATTCTTCAGTATG
LOC_Os03g44010
Os.11590.1.S2_at--364--7671Chr03:24686244..24686268 (25 bp)
GGGTTCGTTGTCAAGCCGCATTACA
LOC_Os03g44010
Os.11590.1.S2_at--1018--4931Chr03:24686261..24686285 (25 bp)
GCATTACACGCCCAAATACTACAGA
LOC_Os03g44010
Os.11590.1.S2_at--791--3611Chr03:24686298..24686322 (25 bp)
CTTGGTATTTATCCACGATCCAGCA
LOC_Os03g44010
Os.11590.1.S2_at--129--6631Chr03:24686359..24686383 (25 bp)
GTTGGTATTTATCCACGATCCAGCA
LOC_Os03g44010
Os.11590.1.S2_at--776--8171Chr03:24686409..24686433 (25 bp)
GGAACTACTACGTTGTATCTTCTGT
LOC_Os03g44010
Os.11590.1.S2_at--516--3451Chr03:24686436..24686460 (25 bp)
CAGTATTGTTTGACACTTGGCAGCA
LOC_Os03g44010
Target Sequence 
GTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATA
TCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTTA
CGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAATCGTTGAACTTGTAATTTCAGCTTT
ATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGGTTCGTTGTCAAGCCGCATTACACG
CCCAAATACTACAGAACCCAATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGA
ACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGTATCTTC
TGTATCAGTATTGTTTGACACTTGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11590.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis