Browse Element(s) Details


OsAffx.22879.1.S1_x_at

Description gb:NM_183811.1
DB_XREF= gi:34894749
GEN=B1135C02.4
TID=OsAffx.22879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1135C02.4 (B1135C02.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g440301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein
LOC_Os03g44020NANA3+24698348..24699752protein kinase PINOID, putative, expressed
LOC_Os03g44030OsAffx.22879.1.S1_x_at1/113+24707230..24707601hypothetical protein
LOC_Os03g44040NANA3+24708363..24708972hypothetical protein
LOC_Os03g44050OsAffx.25531.2.S1_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.2.S1_x_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.1.S1_x_at2/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44070NANA3+24722025..24733234transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22879.1.S1_x_at--462--8631Chr01:12490805..12490829 (25 bp)
TGGGTGCGGCGGCTACATCGGCGAG
NONE
OsAffx.22879.1.S1_x_at--342--2091Chr01:12490791..12490815 (25 bp)
ACATCGGCGAGTACGGTGGCGACAT
NONE
OsAffx.22879.1.S1_x_at--191--4114Chr03:24707279..24707302 (24 bp)
CGACATCGGCTACGGTGGTGGCGGA
LOC_Os03g44030
OsAffx.22879.1.S1_x_at--290--6351Chr01:12490749..12490773 (25 bp)
GATGCGGCGGTCACATCGGCTACAG
NONE
OsAffx.22879.1.S1_x_at--771--9131Chr01:12490747..12490771 (25 bp)
TGCGGCGGTCACATCGGCTACAGTG
NONE
OsAffx.22879.1.S1_x_at--53--8492Chr06:10430994..10431086 (25 bp)
TGGCGGCAGAGCAGATCCGTCTCCG
NONE
OsAffx.22879.1.S1_x_at--603--5771NONE
GACGATGACGAACACGCCCACAGCG
NONE
OsAffx.22879.1.S1_x_at--505--7271Chr01:12489497..12489521 (25 bp)
GTGCCACTTCGCGGCCATGTCATGG
NONE
OsAffx.22879.1.S1_x_at--698--751Chr01:12489481..12489505 (25 bp)
ATGTCATGGCCTACCATCGTCTAGA
NONE
OsAffx.22879.1.S1_x_at--1113--7111Chr01:12489479..12489503 (25 bp)
GTCATGGCCTACCATCGTCTAGATA
NONE
OsAffx.22879.1.S1_x_at--818--8451Chr01:12489475..12489499 (25 bp)
TGGCCTACCATCGTCTAGATACATG
NONE
Target Sequence 
TGGGTGCGGCGGCTACATCGGCGAGTACGGTGGCGACATCGGCTACGGTGGTGGCGGATGCGGCGGTCACATCGGCTACA
GTGGTGGCGGCAGAGCAGATCCGTCTCCGCCCACCGCGGGGAGGCCGGATCCGTCACCGGCGACCGTGGGGACGACGGCG
GCGACGATGACGAACACGCCCACAGCGGCCGCTTGGGCCACCGTGCGACCCTTGCCGCTGCCCTGTGCCACTTCGCGGCC
ATGTCATGGCCTACCATCGTCTAGATACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22879.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis