Browse Element(s) Details


OsAffx.25531.2.S1_x_at

Description tigr:9631.m04253
TID=OsAffx.25531.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4405011/11Protein kinase domain containing protein, expressed
LOC_Os03g441401/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44020NANA3+24698348..24699752protein kinase PINOID, putative, expressed
LOC_Os03g44030OsAffx.22879.1.S1_x_at1/113+24707230..24707601hypothetical protein
LOC_Os03g44040NANA3+24708363..24708972hypothetical protein
LOC_Os03g44050OsAffx.25531.2.S1_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.2.S1_x_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.1.S1_x_at2/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44070NANA3+24722025..24733234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44100OsAffx.13338.1.S1_at9/113+24734710..24737183phosphonate metabolism protein, putative
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25531.2.S1_x_at--629--10531Chr03:24714026..24714050 (25 bp)
TTCAGGGCACCCTGGGCTACCTCGA
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--831--1732Chr03:24752496..24752520 (25 bp)
ACCTCGACCCGGAGAGCTTCGTCAG
LOC_Os03g44140
OsAffx.25531.2.S1_x_at--326--1451Chr03:24713864..24713888 (25 bp)
AGAAGCGGTCTCTGTCCACCGCGTT
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--679--4611Chr03:24713795..24713819 (25 bp)
GCGAGCTCGTGAGGCGCCCCGATGA
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--277--7731Chr03:24713743..24713767 (25 bp)
GGTGGACGTGGTCCGTGAGCTCGCG
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--301--9351Chr03:24713572..24713596 (25 bp)
TCGCAGCTGGATCATGTGTGGAGGA
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--258--7571Chr03:24713532..24713556 (25 bp)
GGGCGCGGCCATTTGGACACGAACA
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--814--211Chr03:24713522..24713546 (25 bp)
ATTTGGACACGAACACGACGGCTTC
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--23--5491Chr03:24713512..24713536 (25 bp)
GAACACGACGGCTTCTTACCAGAGC
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--478--10571Chr03:24713500..24713524 (25 bp)
TTCTTACCAGAGCACGGAGACTGAC
LOC_Os03g44050
OsAffx.25531.2.S1_x_at--1100--5091Chr03:24713489..24713513 (25 bp)
GCACGGAGACTGACAAGATGCCGCT
LOC_Os03g44050
Target Sequence 
TTCAGGGCACCCTGGGCTACCTCGACCCGGAGAGCTTCGTCAGCCGCCACCTCACCGACAAGAGCGACGTGTACAGCTTC
GGCGTCGTCCTCGCGGAGCTCGCCACCCGGAGGAAGGCGGTGTACGACGACGACGACGCCTCCTGCTCCGGCCACGGGGG
CCAGAAGCGGTCTCTGTCCACCGCGTTCCTCGCCGCGCTCAGGCACGGCGAGCTCTGGAGCGTGCTGGACCGCGAGCTCG
TGAGGCGCCCCGATGACGACGGCGACGGCGACGACAAGGCGGCGGTGGACGTGGTCCGTGAGCTCGCGGAGCTCGCGGCG
CGGTGCCTGGGCCCGAGCGGGGACGAGAGGCCGGCGATGAAGGAGGTGGCGGAGCGGCTGCAGGTGCTGAGGCGGCGAGC
CGAGATGCGGGCGGTGGCCGGAGCTGGAAGGGACAGCAACGGTGGCGAGGTGGATCGCAGCTGGATCATGTGTGGAGGAG
GAGGAGGAGCAGTGGGGCGCGGCCATTTGGACACGAACACGACGGCTTCTTACCAGAGCACGGAGACTGACAAGATGCCG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25531.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis