Browse Element(s) Details


OsAffx.25530.1.S1_s_at

Description tigr:9631.m04249
TID=OsAffx.25530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g44000Os.51224.1.S1_at10/113+24675429..24677340expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein
LOC_Os03g44020NANA3+24698348..24699752protein kinase PINOID, putative, expressed
LOC_Os03g44030OsAffx.22879.1.S1_x_at1/113+24707230..24707601hypothetical protein
LOC_Os03g44040NANA3+24708363..24708972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25530.1.S1_s_at--401--7731Chr03:24682494..24682518 (25 bp)
GGTGGACCGTGGACATGCACACTAC
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--1018--651Chr03:24682508..24682532 (25 bp)
ATGCACACTACAAATGTCAGGGTTT
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--938--6591Chr03:24682523..24682547 (25 bp)
GTCAGGGTTTAATCGGATGGGTTCT
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--379--6251Chr03:24682538..24682562 (25 bp)
GATGGGTTCTGATGGCAATTTTGGC
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--350--7851Chr03:24683584..24683608 (25 bp)
GGTACGCCAACTATATCGGGTAAAT
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--667--5311Chr03:24683766..24683790 (25 bp)
GAAGGATAAGAGTGCGCATCACGAT
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--1161--7291Chr03:24683777..24683801 (25 bp)
GTGCGCATCACGATTCAGGAGCTGA
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--14--4051Chr03:24683787..24683811 (25 bp)
CGATTCAGGAGCTGATCGCTCCAAA
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--827--8431Chr03:24683944..24683968 (25 bp)
TGGCAAGTGGTCATAACCCCAAGAA
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--216--5351Chr03:24684191..24684215 (25 bp)
GAAGTTCTTGCTTGGCAATATCACT
LOC_Os03g44010
OsAffx.25530.1.S1_s_at--880--9051Chr03:24684199..24684223 (25 bp)
TGCTTGGCAATATCACTTCCCGAAG
LOC_Os03g44010
Target Sequence 
GGTGGACCGTGGACATGCACACTACAAATGTCAGGGTTTAATCGGATGGGTTCTGATGGCAATTTTGGCAAAGGCTGAAA
AAGGTACGCCAACTATATCGGGTAAATCAAAGATCAAGTCCAAAGACAAAGTAAAGAAGCATAAAAGGCACAAGGAGAAA
GACAAGGACAAGTACAAGGATCAGAAGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGA
AAAAGAAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCTCCAAAAAACATCATG
AGAAGGTTGTTCTATCTACCCTGCTTGATGCAAAAAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTCATAAC
CCCAAGAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25530.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis