Browse Element(s) Details


Os.51224.1.S1_at

Description gb:AK062268.1
DB_XREF= gi:32972286
TID=Os.51224.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A04, full insert sequence.
FL= gb:AK062268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4400010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43980OsAffx.25529.1.S1_at11/113+24651053..24652359amino acid permease family protein, putative
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g44000Os.51224.1.S1_at10/113+24675429..24677340expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein
LOC_Os03g44020NANA3+24698348..24699752protein kinase PINOID, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51224.1.S1_at--97--7151Chr03:24675654..24675678 (25 bp)
GTCTTGCACCGGGTACCTGAAGAGA
LOC_Os03g44000
Os.51224.1.S1_at--591--5971Chr03:24675675..24675699 (25 bp)
GAGAAGCCTGATTTTCCTGAACGAC
LOC_Os03g44000
Os.51224.1.S1_at--331--171Chr03:24675685..24675709 (25 bp)
ATTTTCCTGAACGACGCGTGCTGCG
LOC_Os03g44000
Os.51224.1.S1_at--693--4511Chr03:24675715..24675739 (25 bp)
GCCGAGAGCGTGTACGATGCCCTGA
LOC_Os03g44000
Os.51224.1.S1_at--675--8751Chr03:24675725..24675749 (25 bp)
TGTACGATGCCCTGACGACGGACGC
LOC_Os03g44000
Os.51224.1.S1_at--649--4911Chr03:24675788..24675812 (25 bp)
GCTTCGTCATCAGCGAGTCGCTTCG
LOC_Os03g44000
Os.51224.1.S1_at--594--9331Chr03:24675843..24675867 (25 bp)
TCGCCTGTGCCGCTTCAAGGATCGG
LOC_Os03g44000
Os.51224.1.S1_at--887--2031Chr03:1197948..1198072 (24 bp)
ACTATCCACGACTGCAGGTTCAGTG
NONE
Os.51224.1.S1_at--850--1011Chr03:24676995..24677019 (25 bp)
AGGTTCAGTGGTACCACACGTCACT
LOC_Os03g44000
Os.51224.1.S1_at--570--1891Chr03:24677012..24677036 (25 bp)
ACGTCACTCGCTCTAATTGTAACAC
LOC_Os03g44000
Os.51224.1.S1_at--333--51Chr03:24677273..24677297 (25 bp)
ATTGTACCTGCTTTAAGTGTACTTA
LOC_Os03g44000
Target Sequence 
GTCTTGCACCGGGTACCTGAAGAGAAGCCTGATTTTCCTGAACGACGCGTGCTGCGACGGCGCCGAGAGCGTGTACGATG
CCCTGACGACGGACGCCGCCGTCGACCTCGGCTTCGTGTGCCGCTGCCTGAGGGGCTTCGTCATCAGCGAGTCGCTTCGC
CCTTACCTCTACAGGGTCGCCAATCTGCCTCGCCTGTGCCGCTTCAAGGATCGGGGCCCCATCCCATACAACAACTCCAC
TATCCACGACTGCAGGTTCAGTGGTACCACACGTCACTCGCTCTAATTGTAACACGCTAAGAGCAAATTTAATAGTATAC
CCCACTACTAGCTCTAAATCATCTATAGCCAATATAATAGCTAATTCATACAATAGTTGTTTACTATACTATTAATACCT
GGTCCCACCTGTCATACACACATTACGTTTTGGAGCCCGTGCTGCAGCTGGCTACAGATTTGTAGCCCGCTGCTTTTCTC
TCTTTTTCTTTATCTATTTAAAATATGTTTATAGCTGGCTTATAGCCTGCTATTGTACCTGCTTTAAGTGTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis