Browse Element(s) Details


OsAffx.3507.1.S1_at

Description tigr:9631.m04244
TID=OsAffx.3507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g439608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43944NANA3+24616684..24616906NA
LOC_Os03g43950OsAffx.13335.1.S1_at11/113+24618993..24619316hypothetical protein
LOC_Os03g43960OsAffx.3507.1.S1_at8/113+24640233..24641073hypothetical protein
LOC_Os03g43970NANA3+24647394..24648828Amino acid permease family protein, expressed
LOC_Os03g43980OsAffx.25529.1.S1_at11/113+24651053..24652359amino acid permease family protein, putative
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3507.1.S1_at--746--3331Chr03:24640945..24640969 (25 bp)
CACTGCCGGAGCCGCTACTGCTAGA
LOC_Os03g43960
OsAffx.3507.1.S1_at--46--8091Chr03:24640938..24640962 (25 bp)
GGAGCCGCTACTGCTAGACCCGCTG
LOC_Os03g43960
OsAffx.3507.1.S1_at--472--8051NONE
GGAGAGGGTGGCGTTATTTACACAA
NONE
OsAffx.3507.1.S1_at--86--6031NONE
GAGAGGGTGGCGTTATTTACACAAT
NONE
OsAffx.3507.1.S1_at--1144--6131NONE
GAGGGTGGCGTTATTTACACAATCC
NONE
OsAffx.3507.1.S1_at--992--7711Chr03:24640270..24640738 (25 bp)
GGGTGGCGTTATTTACACAATCCTT
LOC_Os03g43960
OsAffx.3507.1.S1_at--131--7731Chr03:24640269..24640737 (25 bp)
GGTGGCGTTATTTACACAATCCTTC
LOC_Os03g43960
OsAffx.3507.1.S1_at--625--8351Chr03:24640267..24640287 (21 bp)
TGGCGTTATTTACACAATCCTTCGA
LOC_Os03g43960
OsAffx.3507.1.S1_at--624--8351Chr03:24640266..24640287 (22 bp)
GGCGTTATTTACACAATCCTTCGAG
LOC_Os03g43960
OsAffx.3507.1.S1_at--584--4551Chr03:24640265..24640287 (23 bp)
GCGTTATTTACACAATCCTTCGAGA
LOC_Os03g43960
OsAffx.3507.1.S1_at--895--6791Chr03:24640263..24640287 (25 bp)
GTTATTTACACAATCCTTCGAGAGG
LOC_Os03g43960
Target Sequence 
CACTGCCGGAGCCGCTACTGCTAGACCCGCTGCTGCCGCCGGCGGTGGGGAAGGAGGGAGGGAGGAGGAGAGGGTGGCGT
TATTTACACAATCCTTCGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis