Browse Element(s) Details


OsAffx.13335.1.S1_at

Description tigr:9631.m04243
TID=OsAffx.13335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4395011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein
LOC_Os03g43944NANA3+24616684..24616906NA
LOC_Os03g43950OsAffx.13335.1.S1_at11/113+24618993..24619316hypothetical protein
LOC_Os03g43960OsAffx.3507.1.S1_at8/113+24640233..24641073hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13335.1.S1_at--547--8071Chr03:24619227..24619251 (25 bp)
GGAGCAGCCGGCTGTTGCGCTGGAG
LOC_Os03g43950
OsAffx.13335.1.S1_at--786--5931Chr03:24619184..24619208 (25 bp)
GAGCAGCTGGCGGATGTGCTGAAGA
LOC_Os03g43950
OsAffx.13335.1.S1_at--525--5371Chr03:24619164..24619188 (25 bp)
GAAGAAGCCGGCAGTGGTGGAGACT
LOC_Os03g43950
OsAffx.13335.1.S1_at--364--5991Chr03:24619145..24619169 (25 bp)
GAGACTGCTGCGATGTCCGGAGCTT
LOC_Os03g43950
OsAffx.13335.1.S1_at--1112--1971Chr03:24619142..24619166 (25 bp)
ACTGCTGCGATGTCCGGAGCTTCAT
LOC_Os03g43950
OsAffx.13335.1.S1_at--335--772Chr05:18479739..18479760 (22 bp)
ATGTCCGGAGCTTCATCGTCGGCGA
NONE
OsAffx.13335.1.S1_at--657--1891Chr03:24619109..24619133 (25 bp)
ACGTCGGACGGCACAAGGGTGGCAC
LOC_Os03g43950
OsAffx.13335.1.S1_at--997--6171Chr03:24619050..24619074 (25 bp)
GAGGAGAGCTCGGACACGTCCGATC
LOC_Os03g43950
OsAffx.13335.1.S1_at--122--8152Chr09:16582348..16582419 (25 bp)
GGACACGTCCGATCGCGAGAGAGAA
NONE
OsAffx.13335.1.S1_at--972--1891Chr03:24619035..24619059 (25 bp)
ACGTCCGATCGCGAGAGAGAACGAG
LOC_Os03g43950
OsAffx.13335.1.S1_at--109--4051Chr03:24619030..24619054 (25 bp)
CGATCGCGAGAGAGAACGAGTCAAA
LOC_Os03g43950
Target Sequence 
GGAGCAGCCGGCTGTTGCGCTGGAGAAGCCGGCGGTGCCGCTGGAGCAGCTGGCGGATGTGCTGAAGAAGCCGGCAGTGG
TGGAGACTGCTGCGATGTCCGGAGCTTCATCGTCGGCGACGTCGGACGGCACAAGGGTGGCACGGGAGGAGGAGGAGAAG
TCGATGCGTCGACGGAGGAGGAGAGCTCGGACACGTCCGATCGCGAGAGAGAACGAGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis