Browse Element(s) Details


Os.22835.1.S1_at

Description gb:AK120523.1
DB_XREF= gi:37990146
TID=Os.22835.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29969 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126D04, full insert sequence.
FL= gb:AK120523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4391010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein
LOC_Os03g43944NANA3+24616684..24616906NA
LOC_Os03g43950OsAffx.13335.1.S1_at11/113+24618993..24619316hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22835.1.S1_at--641--491Chr03:24595508..24595532 (25 bp)
ATCGGCGCCATCAGGCAGACGCAGC
LOC_Os03g43910
Os.22835.1.S1_at--926--5791NONE
GACGCAGCACCTCATACTGGGACGG
NONE
Os.22835.1.S1_at--722--3031Chr03:24592948..24592972 (25 bp)
AATCCATGAAGGACGATCTTGACCA
LOC_Os03g43910
Os.22835.1.S1_at--345--10171Chr03:24592652..24592676 (25 bp)
TATCATTTTGACTGAGATCTCCGGT
LOC_Os03g43910
Os.22835.1.S1_at--120--1291Chr03:24592638..24592662 (25 bp)
AGATCTCCGGTTGAGTCCTTCTGTA
LOC_Os03g43910
Os.22835.1.S1_at--355--6111Chr03:24592626..24592650 (25 bp)
GAGTCCTTCTGTACTCATCTTGAAG
LOC_Os03g43910
Os.22835.1.S1_at--20--6811Chr03:24592595..24592619 (25 bp)
GTTTTGTCTGCACTTTTGCCGAAAA
LOC_Os03g43910
Os.22835.1.S1_at--477--7171Chr03:24592554..24592578 (25 bp)
GTCTGCTTCTGTTTATTAAGTTGTG
LOC_Os03g43910
Os.22835.1.S1_at--189--6631Chr03:24592535..24592559 (25 bp)
GTTGTGTAACCTTGTAGTCCTATGT
LOC_Os03g43910
Os.22835.1.S1_at--516--2391Chr03:24592428..24592452 (25 bp)
AAACTTGTTGGATCATAGCTACTGT
LOC_Os03g43910
Os.22835.1.S1_at--591--10011Chr03:24592413..24592437 (25 bp)
TAGCTACTGTATTTCCATCGATTTT
LOC_Os03g43910
Target Sequence 
ATCGGCGCCATCAGGCAGACGCAGCACCTCATACTGGGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGA
GTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATC
TTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTNCCCGATGGTGCA
ATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACTGAGATCTCC
GGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCT
GCTTCTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATAACCTTGTAAATAACTG
TTCTCTCTAGATCANCCTCTCTCACACACTTTTGTGTGGNAAAAACTTGTTGGATCATAGCTACTGTATTTCCATCGATT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis