Browse Element(s) Details


Os.37345.1.S1_s_at

Description gb:AK059114.1
DB_XREF= gi:32969132
TID=Os.37345.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E06, full insert sequence.
FL= gb:AK059114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4389011/11WD-40 repeat protein MSI1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed
LOC_Os03g43860Os.8342.1.S1_at11/113+24550991..24554575SNF7 family protein, expressed
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0016568biological_processchromatin modification
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016585cellular_componentchromatin remodeling complex
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37345.1.S1_s_at--877--7731Chr03:24577112..24577136 (25 bp)
GGTGAATTGTCTGGCTTTCAACCCC
LOC_Os03g43890
Os.37345.1.S1_s_at--1008--1951Chr03:24577066..24577090 (25 bp)
ACTGGTTCAACTGACAAGACCGTGA
LOC_Os03g43890
Os.37345.1.S1_s_at--137--5831Chr03:24577049..24577073 (25 bp)
GACCGTGAAACTATTTGATCTTCGG
LOC_Os03g43890
Os.37345.1.S1_s_at--27--4311Chr03:24577010..24577034 (25 bp)
CCTACACACCTTTGATTGCCACAAG
LOC_Os03g43890
Os.37345.1.S1_s_at--596--3631Chr03:24576619..24576643 (25 bp)
CTTGCATCTTGTTGTCTTGGCAGAA
LOC_Os03g43890
Os.37345.1.S1_s_at--963--6591Chr03:24576001..24576025 (25 bp)
GATTGACCAGGAACAGACACCGGAG
LOC_Os03g43890
Os.37345.1.S1_s_at--744--8431Chr03:24575934..24575958 (25 bp)
GGCCATACAAGCAAGATCTCCGACT
LOC_Os03g43890
Os.37345.1.S1_s_at--176--2051Chr03:24575912..24575936 (25 bp)
ACTTCTCCTGGAACCCGTGCGAGGA
LOC_Os03g43890
Os.37345.1.S1_s_at--1042--9991Chr03:24575875..24575899 (25 bp)
TAGCGTCGCTGAGGACAACATCCTT
LOC_Os03g43890
Os.37345.1.S1_s_at--484--1351Chr03:24575833..24575857 (25 bp)
AGAGAACATCTACCATGACGAGGAT
LOC_Os03g43890
Os.37345.1.S1_s_at--691--7991Chr03:24575812..24575836 (25 bp)
GGATGATGTGCCGACTGATGACCCG
LOC_Os03g43890
Target Sequence 
GGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTG
ATCTTCGGAAGATTGATNCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAG
AATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTNTGGGATTTAAGCAGGATTGACCAGGAACAGAC
ACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCT
GGAACCCGTGCGAGGANTGGGTGATTGNTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATC
TACCATGACGAGGATGATGTGCCGACTGATGACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37345.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis