Browse Element(s) Details


Os.53017.1.S1_at

Description gb:AK070475.1
DB_XREF= gi:32980499
TID=Os.53017.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054L05, full insert sequence.
FL= gb:AK070475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0598011/11pentatricopeptide, putative, expressed
LOC_Os03g439101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53017.1.S1_at--1048--5471Chr11:2812573..2812597 (25 bp)
GAACTTGACTGCAATGGCGCTTTCT
LOC_Os11g05980
Os.53017.1.S1_at--468--4491Chr11:2812598..2812622 (25 bp)
GCCGAAAAATTTGCACCGCGCATTT
LOC_Os11g05980
Os.53017.1.S1_at--914--4931Chr11:2812617..2812641 (25 bp)
GCATTTTTCCTTCCACAGGTTACAG
LOC_Os11g05980
Os.53017.1.S1_at--780--7091Chr11:2812684..2812708 (25 bp)
GTCACAGTGAGTGGCGTTTCCTCAA
LOC_Os11g05980
Os.53017.1.S1_at--969--2151Chr11:2812731..2812755 (25 bp)
ACAGCCGTTGCTTTCGATGTTGTGA
LOC_Os11g05980
Os.53017.1.S1_at--615--3451Chr11:2812826..2812850 (25 bp)
CAGTCTTGTTTTGTCATTCGTGCTA
LOC_Os11g05980
Os.53017.1.S1_at--33--1491Chr11:2812869..2812893 (25 bp)
AGCAAGTGTGTTTCTCGTGTCTGTC
LOC_Os11g05980
Os.53017.1.S1_at--792--7452Chr11:2812885..2812909 (25 bp)
GTGTCTGTCTTTTGCTGCTAATGGA
LOC_Os11g05980
Os.53017.1.S1_at--138--7951Chr11:2812907..2812931 (25 bp)
GGATATGTCTTGTGTTCTGCTAACC
LOC_Os11g05980
Os.53017.1.S1_at--28--8031Chr11:2812962..2812986 (25 bp)
GGAGGTCTTCAAATTTCAGCCAGTT
LOC_Os11g05980
Os.53017.1.S1_at--111--9471Chr11:2812995..2813019 (25 bp)
TCTGGATCACTATTTCGCGTTATAT
LOC_Os11g05980
Target Sequence 
GAACTTGACTGCAATGGCGCTTTCTGCCGAAAAATTTGCACCGCGCATTTTTCCTTCCACAGGTTACAGGTACAGTTTCT
CTCGAGAATGTACCAGATTCAGATCCCCCGTGTCACAGTGAGTGGCGTTTCCTCAACGGTTGTTTGCCAAGAACAAACAC
AGCCGTTGCTTTCGATGTTGTGATGGATCTGGAGTGAAAGTCTGCATGATTCCAAACTGAAGTTGCCGTGCAGAAGTATG
TTAGTGTTGCTTGCAGTCTTGTTTTGTCATTCGTGCTAATCTGAATGAGTACTTCCAGCAAGTGTGTTTCTCGTGTCTGT
CTTTTGCTGCTAATGGATATGTCTTGTGTTCTGCTAACCACACTTGAATTCAGTTTGTTTGTTTGGCCTGGAGGTCTTCA
AATTTCAGCCAGTTTTTTCTTCTCTGGATCACTATTTCGCGTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis